RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 SPATS2Q86XZ4 545 aaKnown RBP23.31■■□□□ 1.32
USP4-208ENST00000464168 MFSD2AQ8NA29 543 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 ALG14Q96F25 216 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 CRELD1Q96HD1 420 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 SPAG5Q96R06 1193 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 SLC12A6Q9UHW9 1150 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 SARDHQ9UL12 918 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.31■■□□□ 1.32
USP4-208ENST00000464168 KALRNO60229 2985 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 A0A1B0GVM2 712 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 BICDL2A1A5D9 508 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 TCAF2A6NFQ2 919 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 THAP12O43422 761 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 RTN2O75298 545 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 GNA14O95837 355 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 SLC45A4Q5BKX6 768 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 SFMBT2Q5VUG0 894 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 NAPEPLDQ6IQ20 393 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 KANSL1Q7Z3B3 1105 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 KDM4CQ9H3R0 1056 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 CTNND2Q9UQB3 1225 aa23.3■■□□□ 1.32
USP4-208ENST00000464168 SLC2A3P11169 496 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 GNA15P30679 374 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 HNF1BP35680 557 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 VASPP50552 380 aaPredicted RBP23.29■■□□□ 1.32
USP4-208ENST00000464168 STX17P56962 302 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 PDCLQ13371 301 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 MORC3Q14149 939 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 RABGAP1LQ5R372 815 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 TTC39BQ5VTQ0 682 aaPredicted RBP23.29■■□□□ 1.32
USP4-208ENST00000464168 FBXL22Q6P050 247 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 PRPF39Q86UA1 669 aaKnown RBP23.29■■□□□ 1.32
USP4-208ENST00000464168 WDTC1Q8N5D0 677 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 SLC2A13Q96QE2 648 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 SRRTQ9BXP5 876 aaKnown RBP23.29■■□□□ 1.32
USP4-208ENST00000464168 FAM204AQ9H8W3 233 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 DDIT4Q9NX09 232 aa23.29■■□□□ 1.32
USP4-208ENST00000464168 TP53BP1Q12888 1972 aaPredicted RBP23.29■■□□□ 1.32
USP4-208ENST00000464168 SLC7A4O43246 635 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 PLRG1O43660 514 aaKnown RBP23.28■■□□□ 1.32
USP4-208ENST00000464168 ATP9BO43861 1147 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 MAT2AP31153 395 aaKnown RBP23.28■■□□□ 1.32
USP4-208ENST00000464168 CCR1P32246 355 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 OXCT1P55809 520 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 CDK17Q00537 523 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 CENPCQ03188 943 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 TARDBPQ13148 414 aaKnown RBP eCLIP23.28■■□□□ 1.32
USP4-208ENST00000464168 C6orf118Q5T5N4 469 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 FBXL19Q6PCT2 694 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 DSG4Q86SJ6 1040 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 DEFB106AQ8N104 65 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 OXR1Q8N573 874 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 OR52K2Q8NGK3 314 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 OR8D1Q8WZ84 308 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 NXPE2Q96DL1 559 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 DCBLD2Q96PD2 775 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 FEM1AQ9BSK4 669 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 PPM1HQ9ULR3 514 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 OR51B4Q9Y5P0 310 aa23.28■■□□□ 1.32
USP4-208ENST00000464168 SYNJ2BP-COX16A0A087WUM0 186 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 BECN2A8MW95 431 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 GLI1P08151 1106 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 IRAK1P51617 712 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 CNTN1Q12860 1018 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 AUHQ13825 339 aaKnown RBP23.27■■□□□ 1.32
USP4-208ENST00000464168 ACCSLQ4AC99 568 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 HES3Q5TGS1 186 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 AGBL4Q5VU57 503 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 FAM46CQ5VWP2 391 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 GJB7Q6PEY0 223 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 ENOSF1Q7L5Y1 443 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 IQCHQ86VS3 1027 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 RNF34Q969K3 372 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 RPRD1AQ96P16 312 aaPredicted RBP23.27■■□□□ 1.32
USP4-208ENST00000464168 CPXM1Q96SM3 734 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 COX16Q9P0S2 106 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 DMTF1Q9Y222 760 aa23.27■■□□□ 1.32
USP4-208ENST00000464168 BIN1O00499 593 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 NUDT1P36639 197 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 OVGP1Q12889 678 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 PAK1Q13153 545 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 DLG2Q15700 870 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 POM121L1PQ3SYA9 428 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 TRIM69Q86WT6 500 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 PPP1R9BQ96SB3 815 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 CRACR2AQ9BSW2 395 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 ASNSD1Q9NWL6 643 aa23.26■■□□□ 1.31
USP4-208ENST00000464168 PTPRQQ9UMZ3 2332 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP23.25■■□□□ 1.31
USP4-208ENST00000464168 MCF2LO15068 1137 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 GRAP2O75791 330 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 CKMT2P17540 419 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 ITPKBP27987 946 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 ABCG1P45844 678 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 SEMG2Q02383 582 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 ZNF177Q13360 481 aaPredicted RBP23.25■■□□□ 1.31
USP4-208ENST00000464168 EFHC1Q5JVL4 640 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 Q6ZVU0 165 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 PIP4K2CQ8TBX8 421 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 PPP1R13BQ96KQ4 1090 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms