RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NAGLUP54802 743 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 PGAM4Q8N0Y7 254 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 C12orf29Q8N999 325 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 DQX1Q8TE96 717 aaKnown RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ARNTL2Q8WYA1 636 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 LPGAT1Q92604 370 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 TANKQ92844 425 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 SGF29Q96ES7 293 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF597Q96LX8 424 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 NEURL2Q9BR09 285 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 GPATCH1Q9BRR8 931 aaKnown RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 MUC3BQ9H195 1237 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 TBCCD1Q9NVR7 557 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 COPG1Q9Y678 874 aaKnown RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 A0A096LPK6 155 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TCAF2A6NFQ2 919 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PAPSS1O43252 624 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GRID2O43424 1007 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 RGS20O76081 388 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ENDOD1O94919 500 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GSTT2P0CG29 244 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GSTT2BP0CG30 244 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF182P17025 639 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CYP3A5P20815 502 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 NR4A1P22736 598 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PTGER2P43116 358 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF143P52747 638 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 NUP107P57740 925 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ACTR2P61160 394 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TXNL4AP83876 142 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 NEDD8Q15843 81 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CCDC14Q49A88 953 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 FAM47CQ5HY64 1035 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ZBTB49Q6ZSB9 765 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 LYSMD3Q7Z3D4 306 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SETD3Q86TU7 594 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TP53INP2Q8IXH6 220 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SLC7A5P1Q8MH63 180 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PYROXD2Q8N2H3 581 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TBC1D15Q8TC07 691 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ATP6V0A1Q93050 837 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 FBXL20Q96IG2 436 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 HEXIM2Q96MH2 286 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 OMDQ99983 421 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 HEPHQ9BQS7 1158 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 B3GNT5Q9BYG0 378 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 XYLT2Q9H1B5 865 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 DUS2Q9NX74 493 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 FEM1BQ9UK73 627 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 STYXL1Q9Y6J8 313 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 LOXHD1Q8IVV2 1947 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ADGRA2Q96PE1 1338 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 HTR3EA5X5Y0 456 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 C9IYK1 514 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 H3BMQ9 156 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PHGDHO43175 533 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 KCNH1O95259 989 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PRDX6P30041 224 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GRIA4P48058 902 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 EIF2B2P49770 351 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 BCAP31P51572 246 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SEL1L3Q68CR1 1132 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 STRA8Q7Z7C7 330 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SLC4A11Q8NBS3 891 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 FNIP1Q8TF40 1166 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SLC7A3Q8WY07 619 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 COG8Q96MW5 612 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 BIRC8Q96P09 236 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 APOL2Q9BQE5 337 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TRIM8Q9BZR9 551 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 RPF2Q9H7B2 306 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CXorf21Q9HAI6 301 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CLK4Q9HAZ1 481 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SACM1LQ9NTJ5 587 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 BPTFQ12830 3046 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ZBTB7AO95365 584 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GJB1P08034 283 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TFEBP19484 476 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PPARGP37231 505 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 HSPA13P48723 471 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CLCN2P51788 898 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CSE1LP55060 971 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF460Q14592 562 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 GLRA4Q5JXX5 417 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 EGFLAMQ63HQ2 1017 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 FSTL4Q6MZW2 842 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TTC33Q6PID6 262 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CHSY3Q70JA7 882 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 NIPA1Q7RTP0 329 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CCNYL1Q8N7R7 359 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 RP9Q8TA86 221 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CDKL2Q92772 493 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PPP1R14BQ96C90 147 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 LPIN3Q9BQK8 851 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 TMPRSS4Q9NRS4 437 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PNPLA3Q9NST1 481 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 IGSF9Q9P2J2 1179 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 CNOT6Q9ULM6 557 aaKnown RBP11.93□□□□□ -0.5
CPSF3-202ENST00000460593 SLX4Q8IY92 1834 aa11.93□□□□□ -0.5
CPSF3-202ENST00000460593 PRORSD1PA6NEY8 169 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms