RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 IGDCC3Q8IVU1 814 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 AGGF1Q8N302 714 aaeCLIP14.58□□□□□ -0.08
USP39-207ENST00000450066 TLCD1Q96CP7 247 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 MYEOVQ96EZ4 313 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 ZFRQ96KR1 1074 aaKnown RBP14.58□□□□□ -0.08
USP39-207ENST00000450066 CYP2S1Q96SQ9 504 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 GORASP1Q9BQQ3 440 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 STMN4Q9H169 189 aaPredicted RBP14.58□□□□□ -0.08
USP39-207ENST00000450066 TRPC7Q9HCX4 862 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 NOVA2Q9UNW9 492 aaKnown RBP14.58□□□□□ -0.08
USP39-207ENST00000450066 CHMP2BQ9UQN3 213 aa14.58□□□□□ -0.08
USP39-207ENST00000450066 RANBP2P49792 3224 aaKnown RBP14.58□□□□□ -0.08
USP39-207ENST00000450066 RASA4BC9J798 803 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 F5H423 210 aaPredicted RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 RASA4O43374 803 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 SPAG6O75602 509 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 SUN1O94901 812 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 ARHGEF15O94989 841 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 MBL2P11226 248 aaPredicted RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 HDCP19113 662 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 GABRR2P28476 465 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 OR1E1P30953 314 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 GABPB1Q06547 395 aaPredicted RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 PARP15Q460N3 678 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 TNFAIP8L3Q5GJ75 292 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 RABGAP1LQ5R372 815 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 C9orf50Q5SZB4 431 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 ADGRF1Q5T601 910 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 TXNDC8Q6A555 127 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 LRRC8BQ6P9F7 803 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 RFWD3Q6PCD5 774 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CNTD1Q8N815 330 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 MICAL1Q8TDZ2 1067 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 MAML1Q92585 1016 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 MRPS31Q92665 395 aaKnown RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 SLC22A12Q96S37 553 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 PPCSQ9HAB8 311 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 STOML2Q9UJZ1 356 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 AGO1Q9UL18 857 aaKnown RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 MYO18AQ92614 2054 aaKnown RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 EXOC1LA0A1B0GW35 172 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CACNG3O60359 315 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 RAMP2O60895 175 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CDH16O75309 829 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 AP2A1O95782 977 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 LATS1O95835 1130 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 AGTP01019 485 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 NFKB1P19838 968 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CDC25CP30307 473 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 SSTR1P30872 391 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 GRIA1P42261 906 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 YBEYP58557 167 aaPredicted RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 SMAD3P84022 425 aaKnown RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 CAMK1Q14012 370 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 ANO4Q32M45 955 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CAPN12Q6ZSI9 719 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 SPRED2Q7Z698 418 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 CIR1Q86X95 450 aaPredicted RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 HMCESQ96FZ2 354 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 SIGLEC10Q96LC7 697 aa14.57□□□□□ -0.08
USP39-207ENST00000450066 DDX50Q9BQ39 737 aaKnown RBP14.57□□□□□ -0.08
USP39-207ENST00000450066 GRM6O15303 877 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 CSPG5O95196 566 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 IRF1P10914 325 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 NR1D1P20393 614 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 CDH4P55283 916 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 MAGOHP61326 146 aaKnown RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 PRPSAP1Q14558 356 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 POLD3Q15054 466 aaPredicted RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 PPM1LQ5SGD2 360 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 KCTD11Q693B1 232 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 KDM7AQ6ZMT4 941 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 KLHDC8BQ8IXV7 354 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 HS6ST3Q8IZP7 471 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 CFAP52Q8N1V2 620 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 ARL14EPQ8N8R7 260 aaPredicted RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 SAMD11Q96NU1 681 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 ACSS3Q9H6R3 686 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 ASAH2Q9NR71 780 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 SMPD4Q9NXE4 827 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 FETUBQ9UGM5 382 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 LGALS13Q9UHV8 139 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 RABGEF1Q9UJ41 708 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 ZFP37Q9Y6Q3 630 aaPredicted RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 SHROOM3Q8TF72 1996 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 NYNRINQ9P2P1 1898 aaKnown RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 GRXCR1A8MXD5 290 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 CLDN11O75508 207 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 PEX11BO96011 259 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 CA3P07451 260 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 PFKLP17858 780 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 MMP13P45452 471 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 IFNAR2P48551 515 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 RENBPP51606 427 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 SERINC3Q13530 473 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 HNRNPDQ14103 355 aaKnown RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 FAM109BQ6ICB4 259 aaPredicted RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 TDRPQ86YL5 185 aa14.56□□□□□ -0.08
USP39-207ENST00000450066 RIBC1Q8N443 379 aaPredicted RBP14.56□□□□□ -0.08
USP39-207ENST00000450066 USP33Q8TEY7 942 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms