RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GDF3Q9NR23 364 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 AASDHPPTQ9NRN7 309 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 KLK13Q9UKR3 277 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 INTS6Q9UL03 887 aaKnown RBP7.29□□□□□ -1.24
VPS41-208ENST00000448833 SNX11Q9Y5W9 270 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 CHD6Q8TD26 2715 aa7.29□□□□□ -1.24
VPS41-208ENST00000448833 NBEAQ8NFP9 2946 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 ASPMQ8IZT6 3477 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FREM2Q5SZK8 3169 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 CXorf51AA0A1B0GTR3 108 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 A0A1W2PP55 124 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 TTC34A8MYJ7 566 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 M0QYT0 321 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 MCF2LO15068 1137 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 MID1O15344 667 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 ATP9BO43861 1147 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 GADD45BO75293 160 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 IGHV4-34P06331 123 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 ITGAVP06756 1048 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 MZF1P28698 734 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 CTSKP43235 329 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 CDH4P55283 916 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FAM193AP78312 1265 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 SLC20A2Q08357 652 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 NME3Q13232 169 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 AUHQ13825 339 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 STAT4Q14765 748 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 CAMK4Q16566 473 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 C5orf22Q49AR2 442 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 VWA3BQ502W6 1294 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 HS1BP3Q53T59 392 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 OR6B2Q6IFH4 312 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 NEK5Q6P3R8 708 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 NCEH1Q6PIU2 408 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 SLC26A9Q7LBE3 791 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 TMPRSS7Q7RTY8 843 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 SETD3Q86TU7 594 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 MFSD2AQ8NA29 543 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 OR14C36Q8NHC7 312 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 BAHD1Q8TBE0 780 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 PTPRN2Q92932 1015 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 C18orf8Q96DM3 657 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 PGAP3Q96FM1 320 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 SERAC1Q96JX3 654 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 RPL10LQ96L21 214 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 CPXM1Q96SM3 734 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FAM129BQ96TA1 746 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 ELF4Q99607 663 aaPredicted RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 PRMT1Q99873 361 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 TUBGCP2Q9BSJ2 902 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 NDST4Q9H3R1 872 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 IL21RQ9HBE5 538 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 DYRK4Q9NR20 520 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS41-208ENST00000448833 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 CHMP5Q9NZZ3 219 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 DKK4Q9UBT3 224 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FTSJ1Q9UET6 329 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 SLCO3A1Q9UIG8 710 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 VPS28Q9UK41 221 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 DNAJC12Q9UKB3 198 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 FNDC3AQ9Y2H6 1198 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 TBC1D30Q9Y2I9 924 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 DAAM1Q9Y4D1 1078 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 PCDHGA1Q9Y5H4 931 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 KNTC1P50748 2209 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 DSPP15924 2871 aaKnown RBP7.28□□□□□ -1.24
VPS41-208ENST00000448833 DOCK9Q9BZ29 2069 aa7.28□□□□□ -1.24
VPS41-208ENST00000448833 ADAMTS20P59510 1910 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 GOLGA4Q13439 2230 aaKnown RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 FAM208BQ5VWN6 2430 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 SYNJ2BP-COX16A0A087WUM0 186 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 A0A1B0GTQ1 180 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 BECN2A8MW95 431 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PRAMEF26H0Y7S4 382 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 H0Y8X5 98 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 TLR4O00206 839 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 FOXN3O00409 490 aaPredicted RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 LATO43561 262 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 DAB1O75553 588 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 DKK1O94907 266 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 LDOC1O95751 146 aaPredicted RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 LSM8O95777 96 aaKnown RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 TOP3BO95985 862 aaKnown RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 CALCAP01258 141 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PRNPP04156 253 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PDGFRAP16234 1089 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 EEF1GP26641 437 aaKnown RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 CLCN1P35523 988 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 HNF1BP35680 557 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ETFBP38117 255 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 RECQLP46063 649 aaPredicted RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 GABRB2P47870 512 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 RXRGP48443 463 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PSMD8P48556 350 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 CXCR3P49682 368 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ADPRHP54922 357 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 BNC1Q01954 994 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ILKQ13418 452 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 SLC25A52Q3SY17 297 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms