RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HNRNPLP14866 589 aaKnown RBP eCLIP12.11□□□□□ -0.47
MSH6-204ENST00000445503 VAV1P15498 845 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 IL4RP24394 825 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 PITX1P78337 314 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 R3HDM1Q15032 1099 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 CCDC142Q17RM4 750 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 AGKQ53H12 422 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 SPANXN3Q5MJ09 141 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 NOTUMQ6P988 496 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 LRRC8BQ6P9F7 803 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 EIF2AQ9BY44 585 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 ULBP1Q9BZM6 244 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 WDR41Q9HAD4 459 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 PNPLA8Q9NP80 782 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 V9GYQ6 96 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 C15orf38-AP3S2A0A0A6YYH1 394 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 STX16-NPEPL1H3BU86 382 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 CCNFP41002 786 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ZNF460Q14592 562 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 AAGABQ6PD74 315 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 RBM44Q6ZP01 1051 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 ARPINQ7Z6K5 226 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 MYLK4Q86YV6 388 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 PSTKQ8IV42 348 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.11□□□□□ -0.47
MSH6-204ENST00000445503 NDNQ99608 321 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 UPF3AQ9H1J1 476 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 GPAMQ9HCL2 828 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ZBTB24O43167 697 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 USP17L7P0C7H9 530 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ITGAXP20702 1163 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 CDK7P50613 346 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 RPL14P50914 215 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 PCLAFQ15004 111 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ARL13AQ5H913 290 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 NCBP2-AS2Q69YL0 99 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 SLC9A4Q6AI14 798 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 SNRNP27Q8WVK2 155 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 CCDC97Q96F63 343 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 TSR3Q9UJK0 312 aaKnown RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 NUDT5Q9UKK9 219 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ADAMTS6Q9UKP5 1117 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 LTFP02788 710 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ME2P23368 584 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ZNF618Q5T7W0 954 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 KLC3Q6P597 504 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 CTU1Q7Z7A3 348 aaKnown RBP12.1□□□□□ -0.47
MSH6-204ENST00000445503 PQLC1Q8N2U9 271 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ZNF276Q8N554 614 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 PHC3Q8NDX5 983 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 DNAJC1Q96KC8 554 aaKnown RBP12.1□□□□□ -0.47
MSH6-204ENST00000445503 ARHGEF38Q9NXL2 777 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 CNTN3Q9P232 1028 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 CACNG4Q9UBN1 327 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 HACD1B0YJ81 288 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 DDHD2O94830 711 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 OR6B1O95007 311 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 CD4P01730 458 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 MYL3P08590 195 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 YBX3P16989 372 aaKnown RBP eCLIP12.1□□□□□ -0.471e-10■■□□□ 13.6
MSH6-204ENST00000445503 MATKP42679 507 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 SH3BGRP55822 239 aaPredicted RBP12.1□□□□□ -0.47
MSH6-204ENST00000445503 SEMA5AQ13591 1074 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 SLC5A9Q2M3M2 681 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 C6orf52Q5T4I8 152 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ARMC3Q5W041 872 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 SCN4BQ8IWT1 228 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 DDIASQ8IXT1 998 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 DCUN1D1Q96GG9 259 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 SIKE1Q9BRV8 207 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 FICDQ9BVA6 458 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 MYOCOSA0A1B0GUC4 107 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ATP6AP2A0A1C7CYW4 349 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 HDAC3O15379 428 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ATP6AP2O75787 350 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 STMN1P16949 149 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 NAPEPLDQ6IQ20 393 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ARHGAP22Q7Z5H3 698 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ZDHHC17Q8IUH5 632 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 DSELQ8IZU8 1212 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 OPTNQ96CV9 577 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 GORASP1Q9BQQ3 440 aa12.1□□□□□ -0.47
MSH6-204ENST00000445503 ARHGAP10A1A4S6 786 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 RGSL1A5PLK6 1076 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 TSPAN1O60635 241 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 C22orf31O95567 290 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 AOC1P19801 751 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 TMCO4Q5TGY1 634 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 WSCD1Q658N2 575 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 ATPAF2Q8N5M1 289 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 PPHLN1Q8NEY8 458 aaKnown RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 SLC10A4Q96EP9 437 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 TRPC7Q9HCX4 862 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 LZTS1Q9Y250 596 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 AP4B1Q9Y6B7 739 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 EP400Q96L91 3159 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 CAPN14A8MX76 684 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 GIPC1O14908 333 aa12.09□□□□□ -0.47
MSH6-204ENST00000445503 DDNO94850 711 aaPredicted RBP12.09□□□□□ -0.47
MSH6-204ENST00000445503 SUPT7LO94864 414 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms