RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 FTLP02792 175 aaPredicted RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 C7P10643 843 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 ITPKAP23677 461 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 HOXD12P35452 270 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 VASPP50552 380 aaPredicted RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 RPL7AP62424 266 aaKnown RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 NRG1Q02297 640 aaPredicted RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 SFSWAPQ12872 951 aaKnown RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 NFKBIBQ15653 356 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 ACCSLQ4AC99 568 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 PPP1R15BQ5SWA1 713 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 C9orf64Q5T6V5 341 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 TCEAL6Q6IPX3 200 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 SCYL2Q6P3W7 929 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 RABEPKQ7Z6M1 372 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 FAM124AQ86V42 546 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 VPS36Q86VN1 386 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 SLC41A1Q8IVJ1 513 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 RGL4Q8IZJ4 473 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 TCEAL3Q969E4 200 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 NTAN1Q96AB6 310 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF419Q96HQ0 510 aaPredicted RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 HSPA12BQ96MM6 686 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 C2orf49Q9BVC5 232 aaPredicted RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 GPR174Q9BXC1 333 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 XPO4Q9C0E2 1151 aaKnown RBP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 DLL3Q9NYJ7 618 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 PILRBQ9UKJ0 227 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 SCML1Q9UN30 329 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 OR51B4Q9Y5P0 310 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 MEI4A8MW99 385 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 GDF9O60383 454 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 SERPING1P05155 500 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 PLEKP08567 350 aaPredicted RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 MAMLD1Q13495 774 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 EFHC2Q5JST6 749 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 WDR45BQ5MNZ6 344 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 PLEKHA7Q6IQ23 1121 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 RWDD4Q6NW29 188 aaKnown RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF783Q6ZMS7 281 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 SLFN11Q7Z7L1 901 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 CCDC185Q8N715 623 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 CADM4Q8NFZ8 388 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 CEP76Q8TAP6 659 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 GANCQ8TET4 914 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 PTPRN2Q92932 1015 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 TRIM11Q96F44 468 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 RTKNQ9BST9 563 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 NUSAP1Q9BXS6 441 aaKnown RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 RETREG1Q9H6L5 497 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 TMEM74BQ9NUR3 256 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 CNOT8Q9UFF9 292 aaKnown RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 EVLQ9UI08 416 aaPredicted RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 NCKAP1Q9Y2A7 1128 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 ATXN2Q99700 1313 aaKnown RBP15.59■□□□□ 0.09
LIMS3-201ENST00000437679 NUMA1Q14980 2115 aa15.59■□□□□ 0.09
LIMS3-201ENST00000437679 ILVBLA1L0T0 632 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 PATE3B3GLJ2 98 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 SLC30A4O14863 429 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 ATMINO43313 823 aaPredicted RBP15.58■□□□□ 0.08
LIMS3-201ENST00000437679 ATP9BO43861 1147 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 MYBL1P10243 752 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 PSMA2P25787 234 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 LIMK1P53667 647 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 AIF1P55008 147 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 SCAPQ12770 1279 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 CST6Q15828 149 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 DUOXA1Q1HG43 343 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 TRIM61Q5EBN2 209 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 PEAR1Q5VY43 1037 aaPredicted RBP15.58■□□□□ 0.08
LIMS3-201ENST00000437679 DGLUCYQ7Z3D6 616 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 TMC6Q7Z403 805 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 MMAAQ8IVH4 418 aaKnown RBP15.58■□□□□ 0.08
LIMS3-201ENST00000437679 STK40Q8N2I9 435 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 SH2D3CQ8N5H7 860 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 DCAF4L2Q8NA75 395 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 RNF214Q8ND24 703 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 ZNF653Q96CK0 615 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 TBC1D31Q96DN5 1066 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 SPON2Q9BUD6 331 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 EDEM2Q9BV94 578 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 BTBD1Q9H0C5 482 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 PABPC3Q9H361 631 aaKnown RBP15.58■□□□□ 0.08
LIMS3-201ENST00000437679 RXFP3Q9NSD7 469 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 VPS51Q9UID3 782 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 SCINQ9Y6U3 715 aa15.58■□□□□ 0.08
LIMS3-201ENST00000437679 A0A0D9SEW6 157 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 LNP1A1A4G5 178 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 SNAP91O60641 907 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 LRIG2O94898 1065 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 GYPCP04921 128 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 CFIP05156 583 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 GNSP15586 552 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 RHOQP17081 205 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 MAPKAPK2P49137 400 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 IRX4P78413 519 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 OGDHQ02218 1023 aa15.57■□□□□ 0.08
LIMS3-201ENST00000437679 ELAVL3Q14576 367 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms