RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 PCBP4P57723 403 aaKnown RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CXADRP78310 365 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RHDQ02161 417 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GCNT1Q02742 428 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CCDC173Q0VFZ6 552 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KCNJ12Q14500 433 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ACBD5Q5T8D3 534 aaPredicted RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KDM7AQ6ZMT4 941 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 MMS22LQ6ZRQ5 1243 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ENOSF1Q7L5Y1 443 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SMYD4Q8IYR2 804 aaPredicted RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 APCDD1Q8J025 514 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CCAR2Q8N163 923 aaKnown RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 AADATQ8N5Z0 425 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 EHBP1Q8NDI1 1231 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TFAP2BQ92481 460 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SLC35C1Q96A29 364 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PPP1R16AQ96I34 528 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 LMLNQ96KR4 655 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PRICKLE1Q96MT3 831 aaPredicted RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 BBC3Q96PG8 261 aaPredicted RBP12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 FAM204AQ9H8W3 233 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 EBF2Q9HAK2 575 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KLHL11Q9NVR0 708 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SERGEFQ9UGK8 458 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 VPS28Q9UK41 221 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 BAHCC1Q9P281 2608 aa12.63□□□□□ -0.39
HLA-DQB3-203ENST00000425319 FRYQ5TBA9 3013 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CBX4O00257 560 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CLDN11O75508 207 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PCDH8O95206 1070 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PRNPP04156 253 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GLI1P08151 1106 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 THEGLP0DJG4 465 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RBMS1P29558 406 aaKnown RBP12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GPD2P43304 727 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TMPRSS3P57727 454 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PNOCQ13519 176 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 DLG2Q15700 870 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 MEA1Q16626 185 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TBC1D25Q3MII6 688 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 LRRC31Q6UY01 552 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RRAGAQ7L523 313 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ATP11CQ8NB49 1132 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ADAM32Q8TC27 787 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CLEC4CQ8WTT0 213 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RFFLQ8WZ73 363 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GLMNQ92990 594 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GRAMD1AQ96CP6 724 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 WBP1Q96G27 269 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 C2orf49Q9BVC5 232 aaPredicted RBP12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 MUC3BQ9H195 1237 aa12.62□□□□□ -0.39
HLA-DQB3-203ENST00000425319 H3BM21 787 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ERVH48-1M5A8F1 160 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 THAP12O43422 761 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SIGLEC6O43699 453 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 BRINP1O60477 761 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RTN2O75298 545 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 HNRNPKP61978 463 aaKnown RBP eCLIP12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CFHR1Q03591 330 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KCNMA1Q12791 1236 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KCNH2Q12809 1159 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 PKP1Q13835 747 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SHBQ15464 509 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SFMBT2Q5VUG0 894 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TAC4Q86UU9 113 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ZSCAN30Q86W11 494 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 UBR7Q8N806 425 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 DCBLD1Q8N8Z6 715 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 OR4C6Q8NH72 309 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TPCN2Q8NHX9 752 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 IFT43Q96FT9 208 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 FEM1CQ96JP0 617 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CALN1Q9BXU9 219 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 DPH1Q9BZG8 443 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SYNCQ9H7C4 482 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 UBE2TQ9NPD8 197 aaPredicted RBP12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 THSD1Q9NS62 852 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 DDIT4Q9NX09 232 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RRN3Q9NYV6 651 aa12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.61□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SYNJ2BP-COX16A0A087WUM0 186 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RNF225M0QZC1 329 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 KPNA3O00505 521 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SLC31A1O15431 190 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 TLX3O43711 291 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ATP9BO43861 1147 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SDC3O75056 442 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 AFPP02771 609 aaKnown RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 GP1BAP07359 652 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 HNRNPA2B1P22626 353 aaKnown RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 USP8P40818 1118 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 RPIAP49247 311 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 STK19P49842 368 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 ERVPABLB-1P60509 514 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 INSM1Q01101 510 aaPredicted RBP12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 CNTN1Q12860 1018 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SGCGQ13326 291 aa12.6□□□□□ -0.39
HLA-DQB3-203ENST00000425319 SYPL2Q5VXT5 272 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms