RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 RNF19BQ6ZMZ0 732 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP54-203ENST00000418501 TEKT5Q96M29 485 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TMEM209Q96SK2 561 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TBL1YQ9BQ87 522 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 POLR1EQ9GZS1 481 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 FAM92AA1XBS5 289 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 ERICH4A6NGS2 130 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 H0YGN5 161 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 APOA4P06727 396 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 IL4RP24394 825 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 CTNNB1P35222 781 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 IRAK1P51617 712 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 WDR5P61964 334 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 PCID2Q5JVF3 399 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 PDPK2PQ6A1A2 396 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 RETSATQ6NUM9 610 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 BNIPLQ7Z465 357 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 UMODL1-AS1Q8N2C9 162 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TMEM130Q8N3G9 435 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 CCDC197Q8NCU1 140 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 MRRFQ96E11 262 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 TSPAN17Q96FV3 270 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 AGAP3Q96P47 875 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 FCRL5Q96RD9 977 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 LGMNQ99538 433 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 GLOD4Q9HC38 313 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 NFS1Q9Y697 457 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 ANK1P16157 1881 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 HEATR9A2RTY3 570 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 PTPN3P26045 913 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 HOXC13P31276 330 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 LSP1P33241 339 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 RALGPS1Q5JS13 557 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 RTP2Q5QGT7 225 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SETD3Q86TU7 594 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 PYROXD2Q8N2H3 581 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 PDCD7Q8N8D1 485 aaKnown RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 PABPC5Q96DU9 382 aaKnown RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 CPNE1Q99829 537 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SPON2Q9BUD6 331 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 RHOBTB2Q9BYZ6 727 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 MTMR10Q9NXD2 777 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 KLHL14Q9P2G3 628 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CHN1P15882 459 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 IFNAR2P48551 515 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 ATXN1P54253 815 aaKnown RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 DBN1Q16643 649 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CD300LGQ6UXG3 332 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SDCCAG8Q86SQ7 713 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 GBP7Q8N8V2 638 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 HERPUD2Q9BSE4 406 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 MUC3BQ9H195 1237 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SLC25A51Q9H1U9 297 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 A0A1B0GVM2 712 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 TCAF2A6NFQ2 919 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SERPINF2P08697 491 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CTSAP10619 480 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 HSPA8P11142 646 aaKnown RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 PSMB4P28070 264 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 NNMTP40261 264 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 GDF10P55107 478 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 C1QTNF8P60827 252 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 HTRA3P83110 453 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 RAP1GAP2Q684P5 730 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SCD5Q86SK9 330 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 LCA5Q86VQ0 697 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 NLRP14Q86W24 1093 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SH2D3CQ8N5H7 860 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CCDC68Q9H2F9 335 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 PIDD1Q9HB75 910 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 LRRC4CQ9HCJ2 640 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 UBA2Q9UBT2 640 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 TMEM120BA0PK00 339 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 H0Y626 953 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 FAM107AO95990 144 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 IGLV3-25P01717 112 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CSF2RAP15509 400 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 PBX3P40426 434 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CSE1LP55060 971 aaKnown RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 CBLBQ13191 982 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SEMA3BQ13214 749 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 CDH18Q13634 790 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 SNX30Q5VWJ9 437 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP54-203ENST00000418501 ZNF567Q8N184 647 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 PPP4R1Q8TF05 950 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 MYRFLQ96LU7 910 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 ADAM7Q9H2U9 754 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 DCDC2Q9UHG0 476 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 ARIH1Q9Y4X5 557 aaPredicted RBP8.57□□□□□ -1.04
USP54-203ENST00000418501 INSL5Q9Y5Q6 135 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 HS3ST4Q9Y661 456 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 RPS6KL1Q9Y6S9 549 aa8.57□□□□□ -1.04
USP54-203ENST00000418501 FGF18O76093 207 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 CKMP06732 381 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 HDCP19113 662 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 AVPR1AP37288 418 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 GP5P40197 560 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms