RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 SPECC1Q5M775 1068 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 KIAA1614Q5VZ46 1190 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZNF782Q6ZMW2 699 aaPredicted RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 KRBA2Q6ZNG9 492 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 RBM43Q6ZSC3 357 aaKnown RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 USP50Q70EL3 339 aaPredicted RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 DTX2Q86UW9 622 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 GAS2L3Q86XJ1 694 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PDILTQ8N807 584 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 ENGASEQ8NFI3 743 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 SMARCE1Q969G3 411 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 CCDC47Q96A33 483 aaKnown RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 TRIM44Q96DX7 344 aaPredicted RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 CALML4Q96GE6 196 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 MOGAT1Q96PD6 335 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PTDSS2Q9BVG9 487 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 GLIS2Q9BZE0 524 aaPredicted RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 RANBP17Q9H2T7 1088 aaKnown RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 RPAP3Q9H6T3 665 aaPredicted RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 GLOD4Q9HC38 313 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PGAP2Q9UHJ9 254 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 DDX25Q9UHL0 483 aaKnown RBP4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PNMA2Q9UL42 364 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 HPSEQ9Y251 543 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PLEKHM1Q9Y4G2 1056 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 RLFQ13129 1914 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 PLXNB2O15031 1838 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 KDM3AQ9Y4C1 1321 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 LRRC37A2A6NM11 1700 aa4.18□□□□□ -1.74
HMGB3P20-201ENST00000417997 ARID2Q68CP9 1835 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 FAM237AA0A1B0GTK4 181 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 WIPF3A6NGB9 483 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 GLTPD2A6NH11 291 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 LINC01548A6NM66 108 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 C19orf81C9J6K1 198 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 H0YIZ8 118 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 INO80B-WBP1J3KQ70 363 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 JTBO76095 146 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 TDP2O95551 362 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ICAM1P05362 532 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 PTMAP06454 111 aaKnown RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 FESP07332 822 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 CELA2AP08217 269 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 IL6RP08887 468 aaPredicted RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 POLR2MP0CAP2 368 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 XRCC6P12956 609 aaKnown RBP eCLIP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 HMGCS2P54868 508 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 BACE1P56817 501 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 HNRNPA0Q13151 305 aaKnown RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 PNOCQ13519 176 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 VGLL4Q14135 290 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 E2F2Q14209 437 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 KIAA1755Q5JYT7 1200 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 EMC10Q5UCC4 262 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 RRAGBQ5VZM2 374 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 USP17L6PQ6QN14 398 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 NAPRTQ6XQN6 538 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ARMC9Q7Z3E5 817 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ANKRD13AQ8IZ07 590 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 CPXCR1Q8N123 301 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 IQUBQ8NA54 791 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 SEMA6DQ8NFY4 1073 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 XAGE5Q8WWM1 108 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ATG4AQ8WYN0 398 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 GLG1Q92896 1179 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZKSCAN4Q969J2 545 aaPredicted RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 R3HDM4Q96D70 268 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 C1GALT1C1Q96EU7 318 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 CDCA5Q96FF9 252 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 AK8Q96MA6 479 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 FUCA2Q9BTY2 467 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 PANK2Q9BZ23 570 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 INO80BQ9C086 356 aaPredicted RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 BRINP2Q9C0B6 783 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 TMEM60Q9H2L4 133 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 FBXO28Q9NVF7 368 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 SERGEFQ9UGK8 458 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 TCEAL9Q9UHQ7 104 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZNF112Q9UJU3 913 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 SHOC2Q9UQ13 582 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 MRPS17Q9Y2R5 130 aaKnown RBP4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 RABGAP1Q9Y3P9 1069 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 ZHX2Q9Y6X8 837 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 LCTP09848 1927 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 KIAA1217Q5T5P2 1943 aa4.17□□□□□ -1.74
HMGB3P20-201ENST00000417997 DOCK5Q9H7D0 1870 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 PLXNA1Q9UIW2 1896 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 SLC37A4O43826 429 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 PPIFP30405 207 aaKnown RBP4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 HOXA13P31271 388 aaPredicted RBP4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 TECP42680 631 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 UCP3P55916 312 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 IRX3P78415 501 aaPredicted RBP4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 SETQ01105 290 aaPredicted RBP4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 TFF2Q03403 129 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 KRT17Q04695 432 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 FGL2Q14314 439 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 KARSQ15046 597 aaKnown RBP4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 MTX3Q5HYI7 312 aa4.16□□□□□ -1.74
HMGB3P20-201ENST00000417997 AARS2Q5JTZ9 985 aaKnown RBP4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms