RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SARDHQ9UL12 918 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 NCKAP1Q9Y2A7 1128 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 PCDHB4Q9Y5E5 795 aa13.33□□□□□ -0.28
LINC00339-202ENST00000416769 P4HA2O15460 535 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 LUC7L3O95232 432 aaKnown RBP13.32□□□□□ -0.28
LINC00339-202ENST00000416769 AFPP02771 609 aaKnown RBP13.32□□□□□ -0.28
LINC00339-202ENST00000416769 MYF5P13349 255 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 MZF1P28698 734 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-202ENST00000416769 CD38P28907 300 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 GGCXP38435 758 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 ST8SIA6P61647 398 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 FANCCQ00597 558 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 FILIP1LQ4L180 1135 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 ZC3H12AQ5D1E8 599 aaKnown RBP13.32□□□□□ -0.28
LINC00339-202ENST00000416769 MIIPQ5JXC2 388 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 SFMBT2Q5VUG0 894 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 NUGGCQ68CJ6 796 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 DENND1BQ6P3S1 775 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 PCSK4Q6UW60 755 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-202ENST00000416769 RRAGAQ7L523 313 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 SCML4Q8N228 414 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 OR2T34Q8NGX1 318 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 NXPE2Q96DL1 559 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 MYOCQ99972 504 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 DNAI2Q9GZS0 605 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 VPS16Q9H269 839 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 ACP6Q9NPH0 428 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 ADAMTS1Q9UHI8 967 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 CYTH4Q9UIA0 394 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 AK5Q9Y6K8 562 aa13.32□□□□□ -0.28
LINC00339-202ENST00000416769 LRRC72A6NJI9 287 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 EIF4E1BA6NMX2 242 aaKnown RBP13.31□□□□□ -0.28
LINC00339-202ENST00000416769 TRIM38O00635 465 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 BRINP1O60477 761 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 SERPINC1P01008 464 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 IL1BP01584 269 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 PDGFRAP16234 1089 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 FMO5P49326 533 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 CENPCQ03188 943 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 E2F5Q15329 346 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 TAF5Q15542 800 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 LMO3Q8TAP4 145 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 IRGQQ8WZA9 623 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 SLC39A7Q92504 469 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 GDF3Q9NR23 364 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 TAB2Q9NYJ8 693 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 ARHGAP20Q9P2F6 1191 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 CEP83Q9Y592 693 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 PCDHB1Q9Y5F3 818 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 PCDHGA1Q9Y5H4 931 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 ITIH6Q6UXX5 1313 aa13.31□□□□□ -0.28
LINC00339-202ENST00000416769 ASH1LQ9NR48 2969 aaKnown RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 EDDM13A0A1B0GTR0 161 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 GTPBP10A4D1E9 387 aaKnown RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 CYSRT1A8MQ03 144 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 TLR4O00206 839 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 IRAK2O43187 625 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 LATO43561 262 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 ASLP04424 464 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 GOT1P17174 413 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 TACR2P21452 398 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 CCR5P51681 352 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 UBASH3AP57075 661 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 ECT2LQ008S8 904 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 INSM1Q01101 510 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 CETN1Q12798 172 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 ARID5BQ14865 1188 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 NR1I3Q14994 352 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 CNGA2Q16280 664 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 INAVAQ3KP66 663 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 CHSY1Q86X52 802 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 UNC45BQ8IWX7 931 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 PPM1KQ8N3J5 372 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 FRS2Q8WU20 508 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 KLK6Q92876 244 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 FAM149B1Q96BN6 582 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 KREMEN1Q96MU8 473 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 NAP1L5Q96NT1 182 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 FCRL3Q96P31 734 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 UBL7Q96S82 380 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-202ENST00000416769 ST7Q9NRC1 585 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 UCKL1Q9NWZ5 548 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 FZD4Q9ULV1 537 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 TLR6Q9Y2C9 796 aa13.3□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3DA0A087WVF3 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3IA0A087WXS9 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3EA0A087X179 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3KA0A087X1G2 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 A0A1B0GTH6 734 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3FA6NER0 549 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 GOLGA6L3A6NEY3 463 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3LB9A6J9 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 RNASEH1O60930 286 aaKnown RBP13.29□□□□□ -0.28
LINC00339-202ENST00000416769 PAEPP09466 180 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 TBC1D3HP0C7X1 549 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 PRLRP16471 622 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 CCDC173Q0VFZ6 552 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 CNTN1Q12860 1018 aa13.29□□□□□ -0.28
LINC00339-202ENST00000416769 PROX2Q3B8N5 592 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms