RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ANKRD20A1Q5TYW2 823 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ANKRD20A3Q5VUR7 823 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ANKRD22Q5VYY1 191 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TIGD7Q6NT04 549 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 TMC5Q6UXY8 1006 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 C4orf22Q6V702 233 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TMEM184AQ6ZMB5 413 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ARHGEF18Q6ZSZ5 1173 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CHST9Q7L1S5 443 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PCGF5Q86SE9 256 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 HOOK3Q86VS8 718 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 LRRC49Q8IUZ0 686 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 BBS7Q8IWZ6 715 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PPIL6Q8IXY8 311 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZNF567Q8N184 647 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 MREGQ8N565 214 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZCCHC9Q8N567 271 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 TAB3Q8N5C8 712 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 NAT8LQ8N9F0 302 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 HJURPQ8NCD3 748 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 TTC16Q8NEE8 873 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RIN3Q8TB24 985 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ITFG1Q8TB96 612 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 SH3RF2Q8TEC5 729 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ING5Q8WYH8 240 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PRCCQ92733 491 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 USP13Q92995 863 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 HMCESQ96FZ2 354 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZNF419Q96HQ0 510 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 TSGA13Q96PP4 275 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 VAT1Q99536 393 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CEP41Q9BYV8 373 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TXLNGYQ9BZA5 131 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZNF576Q9H609 170 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 IGFLR1Q9H665 355 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RAB6BQ9NRW1 208 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 SEPT10Q9P0V9 454 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 METRNQ9UJH8 293 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ANAPC5Q9UJX4 755 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZNF510Q9Y2H8 683 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 MRPS23Q9Y3D9 190 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 TMEM265A0A087WTH1 108 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 A0A1W2PPC1 479 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TCRBV7S3A2A0A539 114 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TYW5A2RUC4 315 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 ARHGAP42A6NI28 874 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SMAPO00193 183 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 MATN3O15232 486 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 CHADO15335 359 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TSPAN3O60637 253 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TBL1XO60907 577 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 PPFIA2O75334 1257 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SASH3O75995 380 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 LUC7L3O95232 432 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 PEX11BO96011 259 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 RHOCP08134 193 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 C7P10643 843 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TPSB2P20231 275 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 PSMB4P28070 264 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 HOXD9P28356 352 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 WEE1P30291 646 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 FDFT1P37268 417 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 YBEYP58557 167 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 GNA12Q03113 381 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 GAD2Q05329 585 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 DHX9Q08211 1270 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 SERINC3Q13530 473 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SEMA5AQ13591 1074 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 POLD3Q15054 466 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 TPSAB1Q15661 275 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 C6orf118Q5T5N4 469 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 RNF43Q68DV7 783 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 CXorf57Q6NSI4 855 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 ANKRD54Q6NXT1 300 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SYCE2Q6PIF2 218 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 HDXQ7Z353 690 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 DENND4AQ7Z401 1863 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 GPR149Q86SP6 731 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SETD3Q86TU7 594 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 NPAS3Q8IXF0 933 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 CPXM2Q8N436 756 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 TSEN2Q8NCE0 465 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 OR52K2Q8NGK3 314 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 ZSCAN18Q8TBC5 510 aaPredicted RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 MAML1Q92585 1016 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 ARHGEF2Q92974 986 aaKnown RBP6.8□□□□□ -1.32
VPS41-204ENST00000413141 FATE1Q969F0 183 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 ZSWIM3Q96MP5 696 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 GORASP1Q9BQQ3 440 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 FUT8Q9BYC5 575 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 FOXP3Q9BZS1 431 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 PHACTR1Q9C0D0 580 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 MAGEH1Q9H213 219 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 GBA3Q9H227 469 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 KIF9Q9HAQ2 790 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SP110Q9HB58 689 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 PDFQ9HBH1 243 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 ETNK1Q9HBU6 452 aa6.8□□□□□ -1.32
VPS41-204ENST00000413141 SCUBE2Q9NQ36 999 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms