RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PCDHA10Q9Y5I2 948 aa6.94□□□□□ -1.3
USP40-202ENST00000409945 AHRRA9YTQ3 701 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 FAM86B1E9PN63 330 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 HBP1O60381 514 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 MFAP3LO75121 409 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 TCEA3O75764 348 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 FAM86B2P0C5J1 330 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 ARP10275 920 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 CKBP12277 381 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 MARK3P27448 753 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 GALNT1Q10472 559 aaPredicted RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 LETM2Q2VYF4 491 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 C9orf50Q5SZB4 431 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 FAM109BQ6ICB4 259 aaPredicted RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 SERINC5Q86VE9 423 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 DEFB123Q8N688 67 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 NECAB1Q8N987 351 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 RDM1Q8NG50 284 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 LRRC46Q96FV0 321 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 GPR87Q9BY21 358 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 ZNF518BQ9C0D4 1074 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 RNPEPQ9H4A4 650 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 NRBP2Q9NSY0 501 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 TBC1D23Q9NUY8 699 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 SETD4Q9NVD3 440 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 CTTNBP2NLQ9P2B4 639 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 DDX25Q9UHL0 483 aaKnown RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 A0A087WV62 115 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 GSTTP1A0A1W2PQM5 241 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 CCNT1O60563 726 aaKnown RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 IPO13O94829 963 aaKnown RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 TMOD1P28289 359 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 TCF15Q12870 199 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 ARL13BQ3SXY8 428 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 Q4G0T1 1027 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 ZNF484Q5JVG2 852 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 ZFYVE27Q5T4F4 411 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 LMBRD2Q68DH5 695 aaPredicted RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 HTR3DQ70Z44 454 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 MIER3Q7Z3K6 550 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 CCDC83Q8IWF9 413 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 Q8NA96 180 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 CYP2W1Q8TAV3 490 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 PHOSPHO2Q8TCD6 241 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 SEPT8Q92599 483 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 APBB2Q92870 758 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 C8orf76Q96K31 380 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 FAM20AQ96MK3 541 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 SLC46A1Q96NT5 459 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 SLC28A3Q9HAS3 691 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 MYO1AQ9UBC5 1043 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 MID2Q9UJV3 735 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 KCNJ14Q9UNX9 436 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 COL1A2P08123 1366 aa6.93□□□□□ -1.3
USP40-202ENST00000409945 RANBP2P49792 3224 aaKnown RBP6.93□□□□□ -1.3
USP40-202ENST00000409945 UMODL1Q5DID0 1318 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 IGLV3-22A0A075B6J6 115 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 CYP3A7-CYP3A51PA0A087WV96 503 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 CYP3A7P24462 503 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 ZFP36P26651 326 aaKnown RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 ITGB3BPQ13352 177 aaPredicted RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 DGKKQ5KSL6 1271 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 ZNF585AQ6P3V2 769 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 GLB1LQ6UWU2 654 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 PIK3AP1Q6ZUJ8 805 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 POLNQ7Z5Q5 900 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 RHOT2Q8IXI1 618 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 NME8Q8N427 588 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 USP38Q8NB14 1042 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 PSD4Q8NDX1 1056 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 CCDC43Q96MW1 224 aaKnown RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 JPH2Q9BR39 696 aaPredicted RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 SPATA5L1Q9BVQ7 753 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 MS4A7Q9GZW8 240 aaPredicted RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 MSL2Q9HCI7 577 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 HESX1Q9UBX0 185 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 ITGB1BP2Q9UKP3 347 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 NOL7Q9UMY1 257 aaKnown RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 MAN2B2Q9Y2E5 1009 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.92□□□□□ -1.3
USP40-202ENST00000409945 PCDHGB3Q9Y5G1 929 aa6.92□□□□□ -1.3
USP40-202ENST00000409945 H7C4K7 107 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 MSH4O15457 936 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 MAGEB2O15479 319 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 CHMP2AO43633 222 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 ZNF623O75123 536 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 SUN1O94901 812 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 MMP1P03956 469 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 INSRRP14616 1297 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 FGFR4P22455 802 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 ZNF618Q5T7W0 954 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 ATP8B4Q8TF62 1192 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 CRYGNQ8WXF5 182 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 TRIB1Q96RU8 372 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 MAP7D2Q96T17 732 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 MRPS17Q9Y2R5 130 aaKnown RBP6.91□□□□□ -1.3
USP40-202ENST00000409945 PLEKHM1Q9Y4G2 1056 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 DOCK5Q9H7D0 1870 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 TANC1Q9C0D5 1861 aa6.91□□□□□ -1.3
USP40-202ENST00000409945 SMIM35A0A1B0GVV1 85 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms