RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 SLC7A9P82251 487 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 PDIA2Q13087 525 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 CBX2Q14781 532 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 FASTKD3Q14CZ7 662 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 HIF1AQ16665 826 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DUSP6Q16828 381 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 POTEHQ6S545 545 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 CAPN12Q6ZSI9 719 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 RTL10Q7L3V2 364 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 MTERF4Q7Z6M4 381 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 HOOK3Q86VS8 718 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ANKMY2Q8IV38 441 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 CMTM8Q8IZV2 173 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 SMG7Q92540 1137 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 AZIN2Q96A70 460 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ZNF707Q96C28 371 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ACBD3Q9H3P7 528 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DPP7Q9UHL4 492 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 RSPH14Q9UHP6 348 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 IPO11Q9UI26 975 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DOCK4Q8N1I0 1966 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 A0A0D9SEW6 157 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ARHGAP42A6NI28 874 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 NDC80O14777 642 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 CHADO15335 359 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 MTSS1O43312 755 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 GREM1O60565 184 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 NEBLO76041 1014 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 FGF19O95750 216 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ACVRL1P37023 503 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ARL4CP56559 192 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 SLC29A2Q14542 456 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 KYNUQ16719 465 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 MSS51Q4VC12 460 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DENND2CQ68D51 928 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ELMSAN1Q6PJG2 1045 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 CENPUQ71F23 418 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 BBS7Q8IWZ6 715 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ZBED8Q8IZ13 594 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 OR52K2Q8NGK3 314 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 SH3RF2Q8TEC5 729 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 PABPC5Q96DU9 382 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ZNF419Q96HQ0 510 aaPredicted RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 ZSWIM3Q96MP5 696 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DDX50Q9BQ39 737 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 TSPYL1Q9H0U9 437 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 LMAN2LQ9H0V9 348 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 EPB41L4BQ9H329 900 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 PABPC3Q9H361 631 aaKnown RBP12.74□□□□□ -0.37
CHMP3-204ENST00000409727 SP110Q9HB58 689 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DONSONQ9NYP3 566 aa12.74□□□□□ -0.37
CHMP3-204ENST00000409727 DENND4CQ5VZ89 1909 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 AGPSO00116 658 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TBL1XO60907 577 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 SHBGP04278 402 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 CEBPBP17676 345 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 NFKB1P19838 968 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 MAGEA4P43358 317 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 MAPKAPK2P49137 400 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 CDH4P55283 916 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 ZNF177Q13360 481 aaPredicted RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 SPARCL1Q14515 664 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 BBS9Q3SYG4 887 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 C5orf22Q49AR2 442 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TEX44Q53QW1 395 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 PRSS36Q5K4E3 855 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 ALS2CLQ60I27 953 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TIGD7Q6NT04 549 aaPredicted RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 C4orf22Q6V702 233 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 Q6ZNB5 142 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TPGS1Q6ZTW0 290 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 OTOP3Q7RTS5 596 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 IQCKQ8N0W5 287 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 CARNMT1Q8N4J0 409 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 PDCD7Q8N8D1 485 aaKnown RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 ITFG1Q8TB96 612 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 EXOC4Q96A65 974 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TSGA13Q96PP4 275 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 SPON2Q9BUD6 331 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 TASP1Q9H6P5 420 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 PIH1D1Q9NWS0 290 aaKnown RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 PLK2Q9NYY3 685 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 UBP1Q9NZI7 540 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 CDH22Q9UJ99 828 aa12.73□□□□□ -0.37
CHMP3-204ENST00000409727 MRPS23Q9Y3D9 190 aaKnown RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.73□□□□□ -0.37
CHMP3-204ENST00000409727 MATN3O15232 486 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 RIPK2O43353 540 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 C1RP00736 705 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 CD68P34810 354 aaPredicted RBP12.72□□□□□ -0.37
CHMP3-204ENST00000409727 FDFT1P37268 417 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 ETFBP38117 255 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 GRIA1P42261 906 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 IFFO1Q0D2I5 559 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 OLIG2Q13516 323 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 SEMA5AQ13591 1074 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 PARP6Q2NL67 630 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 PARP15Q460N3 678 aa12.72□□□□□ -0.37
CHMP3-204ENST00000409727 RARS2Q5T160 578 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms