RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 COL22A1Q8NFW1 1626 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 TP73O15350 636 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 TSPAN3O60637 253 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SIN3BO75182 1162 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 TRIM16O95361 564 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ETFBP38117 255 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ADIGQ0VDE8 80 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PDK2Q15119 407 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PRKD1Q15139 912 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 BNC2Q6ZN30 1099 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 UBE2Q1Q7Z7E8 422 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 OLIG1Q8TAK6 271 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SMARCAD1Q9H4L7 1026 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 MAP3K20Q9NYL2 800 aaKnown RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 CBFA2T3O75081 653 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 TMEM198Q66K66 360 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SEL1L3Q68CR1 1132 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 AMIGO2Q86SJ2 522 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 CHST13Q8NET6 341 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 NRG4Q8WWG1 115 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 CYGBQ8WWM9 190 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 OSMRQ99650 979 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SPATA16Q9BXB7 569 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ADNPQ9H2P0 1102 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PDGFCQ9NRA1 345 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PRMT7Q9NVM4 692 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SYBUQ9NX95 663 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 DCDC2Q9UHG0 476 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF214Q9UL59 606 aaPredicted RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 SAC3D1A6NKF1 404 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 C9JVG2 144 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 CHADO15335 359 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 AKR1D1P51857 326 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 NSUN2Q08J23 767 aaKnown RBP eCLIP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 GPR162Q16538 588 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 CCDC153Q494R4 210 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 EGFLAMQ63HQ2 1017 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 ARMCX2Q7L311 632 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 IFNLR1Q8IU57 520 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 SCN4BQ8IWT1 228 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 PEX5LQ8IYB4 626 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 BHLHE22Q8NFJ8 381 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 AFG1LQ8WV93 481 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 ZFAND2BQ8WV99 257 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 RCN3Q96D15 328 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 DGCR14Q96DF8 476 aaKnown RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 KLRG1Q96E93 195 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 PEBP4Q96S96 227 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 UPF3AQ9H1J1 476 aaKnown RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 SPATA31C2B4DYI2 1134 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 CLDN5O00501 218 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 OR6B1O95007 311 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 NAT1P18440 290 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 HMOX2P30519 316 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 NUP107P57740 925 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 FOLH1Q04609 750 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 CSHL1Q14406 222 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 LPIN1Q14693 890 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 C1QTNF12Q5T7M4 302 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 METTL7BQ6UX53 244 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 NET1Q7Z628 596 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 PHTF2Q8N3S3 785 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 SLC4A11Q8NBS3 891 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 NLGN2Q8NFZ4 835 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 TEPSINQ96N21 525 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 DACH2Q96NX9 599 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 LENG8Q96PV6 779 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 DHX33Q9H6R0 707 aaKnown RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 SARS2Q9NP81 518 aaKnown RBP12.16□□□□□ -0.46
HMGB1-206ENST00000405805 CDYLQ9Y232 598 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 VAPBO95292 243 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 APOA1P02647 267 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 HNRNPLP14866 589 aaKnown RBP eCLIP12.16□□□□□ -0.462e-8■□□□□ 9.1
HMGB1-206ENST00000405805 MPSTP25325 297 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 ALDH1A3P47895 512 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 TRAF2Q12933 501 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 DLG1Q12959 904 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 AGKQ53H12 422 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 ELMSAN1Q6PJG2 1045 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 MINDY3Q9H8M7 445 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 COG4Q9H9E3 785 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 GOLGA2P5Q9HBQ8 144 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 TRPC7Q9HCX4 862 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 VANGL2Q9ULK5 521 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 KIAA1551Q9HCM1 1747 aa12.16□□□□□ -0.46
HMGB1-206ENST00000405805 STX16-NPEPL1H3BU86 382 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 IL18RAPO95256 599 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SERPINA6P08185 405 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 CYP2C8P10632 490 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 GP5P40197 560 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ST13P50502 369 aaKnown RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ABCE1P61221 599 aaKnown RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PTK2BQ14289 1009 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PDK1Q15118 436 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PACS1Q6VY07 963 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 KYQ8NBH2 561 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 EMID1Q96A84 441 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 MFSD3Q96ES6 412 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 MRPL45Q9BRJ2 306 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms