RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 OR2T34Q8NGX1 318 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 OR14C36Q8NHC7 312 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 ADAMTS14Q8WXS8 1223 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 NPY6RQ99463 290 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 FEM1AQ9BSK4 669 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 PDCL3Q9H2J4 239 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 ADAMTS1Q9UHI8 967 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 SSUH2Q9Y2M2 353 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 OR51B4Q9Y5P0 310 aa17.06■□□□□ 0.32
PTPRK-208ENST00000392449 SRRM3A6NNA2 597 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FLRT2O43155 660 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 BNIP3LO60238 219 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 RTN2O75298 545 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 GOT1P17174 413 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 C5AR1P21730 350 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 RDXP35241 583 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 KLK7P49862 253 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 SLC12A1Q13621 1099 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ELAVL3Q14576 367 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 TRNP1Q6NT89 227 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 Q6ZVU0 165 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 GLRX5Q86SX6 157 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 NOP9Q86U38 636 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ZNF397Q8NF99 534 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 TBCBQ99426 244 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 NAA15Q9BXJ9 866 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 TKTL2Q9H0I9 626 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 AASDHPPTQ9NRN7 309 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 TAB2Q9NYJ8 693 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 VPS28Q9UK41 221 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FZD4Q9ULV1 537 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 CELSR3Q9NYQ7 3312 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FAM221BA6H8Z2 402 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 LRRC72A6NJI9 287 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 C10orf142B7Z368 130 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 GOLGA8SH3BPF8 625 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 SNAP91O60641 907 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ADH1BP00325 375 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 MT-CO1P00395 513 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ERCC5P28715 1186 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FLT3P36888 993 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 NNMTP40261 264 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 RACK1P63244 317 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ZNF177Q13360 481 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 CCDC157Q569K6 752 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 FAM102AQ5T9C2 384 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 SND1Q7KZF4 910 aaKnown RBP eCLIP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 XYLT1Q86Y38 959 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 GATAD2AQ86YP4 633 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ZNF683Q8IZ20 524 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 TMEM35BQ8NCS4 154 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ACE2Q9BYF1 805 aaPredicted RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 ARHGEF38Q9NXL2 777 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 APOBEC2Q9Y235 224 aaKnown RBP17.05■□□□□ 0.32
PTPRK-208ENST00000392449 PCDHGB2Q9Y5G2 931 aa17.05■□□□□ 0.32
PTPRK-208ENST00000392449 PKD1L2Q7Z442 2459 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 TMEM8BA6NDV4 472 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 K7ERQ8 282 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 TAF4O00268 1085 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 VILLO15195 856 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 MMEP08473 750 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 UCHL3P15374 230 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 MAT2AP31153 395 aaKnown RBP17.04■□□□□ 0.32
PTPRK-208ENST00000392449 CDH5P33151 784 aaPredicted RBP17.04■□□□□ 0.32
PTPRK-208ENST00000392449 CXCR3P49682 368 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 CCT8P50990 548 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 C21orf59P57076 290 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 SULT2A1Q06520 285 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 DLG2Q15700 870 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 RAB6CQ53S08 254 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 TCP11X2Q5H9J9 407 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 TFAP2DQ7Z6R9 452 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 SLC20A1Q8WUM9 679 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 CPA5Q8WXQ8 436 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 SPAG5Q96R06 1193 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 PSMB7Q99436 277 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 RAB6CQ9H0N0 254 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 MUC3BQ9H195 1237 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 WDCPQ9H6R7 721 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 MPP6Q9NZW5 540 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 SLC25A13Q9UJS0 675 aa17.04■□□□□ 0.32
PTPRK-208ENST00000392449 LAMA5O15230 3695 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3DA0A087WVF3 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3IA0A087WXS9 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3EA0A087X179 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3KA0A087X1G2 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3FA6NER0 549 aaPredicted RBP17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3LB9A6J9 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 F8VZ95 297 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 RNF103O00237 685 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 CBX4O00257 560 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 ATP9BO43861 1147 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 CLDN11O75508 207 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 TBC1D3HP0C7X1 549 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 GABRB2P47870 512 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 BPIFB4P59827 614 aa17.03■□□□□ 0.32
PTPRK-208ENST00000392449 DEUP1Q05D60 604 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms