RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PIGVQ9NUD9 493 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ARL8BQ9NVJ2 186 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PIH1D1Q9NWS0 290 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 IGSF9Q9P2J2 1179 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 KANSL3Q9P2N6 904 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TMEM88BA6NKF7 163 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 KCNK1O00180 336 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PTGESO14684 152 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SEPT4O43236 478 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PFDN1O60925 122 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 LTFP02788 710 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 MLH1P40692 756 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 DAOAP59103 153 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SPANXN3Q5MJ09 141 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TMEM53Q6P2H8 277 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ZNF567Q8N184 647 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ANKK1Q8NFD2 765 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ADAM32Q8TC27 787 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TRIB2Q92519 343 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 LPPQ93052 612 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 NTAN1Q96AB6 310 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SKA1Q96BD8 255 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PPP1R10Q96QC0 940 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 LRRC40Q9H9A6 602 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 RNPEPL1Q9HAU8 725 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PLAC1Q9HBJ0 212 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TMPRSS4Q9NRS4 437 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SIRPGQ9P1W8 387 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TIMM13Q9Y5L4 95 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PTCH2Q9Y6C5 1203 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ATP9BO43861 1147 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SPATA31D3P0C874 917 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 HOXD10P28358 340 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 HALP42357 657 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PRPSAP1Q14558 356 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 FASTKD1Q53R41 847 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 GDF6Q6KF10 455 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SPATA31D4Q6ZUB0 917 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 HFE2Q6ZVN8 426 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ZBTB8BQ8NAP8 495 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 RAET1EQ8TD07 263 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 NT5C3BQ969T7 300 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 NR1H4Q96RI1 486 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 NDNQ99608 321 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 FAM105AQ9NUU6 356 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 THAP1Q9NVV9 213 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SYBUQ9NX95 663 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 MARCOQ9UEW3 520 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 CDH9Q9ULB4 789 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TLL2Q9Y6L7 1015 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 GABRDO14764 452 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 ALDH1A2O94788 518 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 ATP5BP06576 529 aaKnown RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 ASGR1P07306 291 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 GP5P40197 560 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 ZNF135P52742 658 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 SP3Q02447 781 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 TRIM32Q13049 653 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 N4BP2L1Q5TBK1 243 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 C6orf163Q5TEZ5 329 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 PAQR9Q6ZVX9 377 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 ZNF669Q96BR6 464 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 WDCPQ9H6R7 721 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 KCNK13Q9HB14 408 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 CASTOR2A6NHX0 329 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 TPP1O14773 563 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 NRP1O14786 923 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 HNRNPRO43390 633 aaKnown RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 USP17L7P0C7H9 530 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 SPRP35270 261 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 AQP5P55064 265 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 GJA9P57773 515 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 WASHC5Q12768 1159 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 DPYSQ14117 519 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 KCNA10Q16322 511 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 PAN2Q504Q3 1202 aaKnown RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 STXBP5Q5T5C0 1151 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 GRTP1Q5TC63 336 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 TRPV1Q8NER1 839 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 STMN2Q93045 179 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 CERS2Q96G23 380 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 SMARCD1Q96GM5 515 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 CPNE1Q99829 537 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 FAM96AQ9H5X1 160 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 FBXW11Q9UKB1 542 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 TRHDEQ9UKU6 1024 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 PRELID1Q9Y255 219 aa9.85□□□□□ -0.83
COL6A3-204ENST00000392003 MYO18AQ92614 2054 aaKnown RBP9.85□□□□□ -0.83
COL6A3-204ENST00000392003 C2orf71A6NGG8 1288 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 YJEFN3A6XGL0 299 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ERI2A8K979 691 aaKnown RBP9.84□□□□□ -0.83
COL6A3-204ENST00000392003 E7ENQ6 273 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 SPECC1L-ADORA2AF8WAN1 911 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 DCLK1O15075 740 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 TRPA1O75762 1119 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 ITGA2BP08514 1039 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 HCAR3P49019 387 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 COG7P83436 770 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 OCRLQ01968 901 aa9.84□□□□□ -0.83
COL6A3-204ENST00000392003 CDK18Q07002 472 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms