RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IL27RAQ6UWB1 636 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 EXOC3L1Q86VI1 746 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CHPFQ8IZ52 775 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 GNPTGQ9UJJ9 305 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SETBP1Q9Y6X0 1596 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 MRASO14807 208 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 TGFB3P10600 412 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 DPEP1P16444 411 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NDST1P52848 882 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ACAP1Q15027 740 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NEDD8Q15843 81 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 LRRC74BQ6ZQY2 392 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 LGI2Q8N0V4 545 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SNX6Q9UNH7 406 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NEXMIFQ5QGS0 1516 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 FAM171A1Q5VUB5 890 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF470Q6ECI4 717 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 DOK6Q6PKX4 331 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RBM43Q6ZSC3 357 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 EIF3MQ7L2H7 374 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 MCOLN2Q8IZK6 566 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 Q96MT0 163 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 OSMRQ99650 979 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 C1orf50Q9BV19 199 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 POMCP01189 267 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RAG1P15918 1043 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 NUMBP49757 651 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC45A4Q5BKX6 768 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 KYAT3Q6YP21 454 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 STK32CQ86UX6 486 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 EMC1Q8N766 993 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ZDHHC15Q96MV8 337 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 VAT1Q99536 393 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 COMMD9Q9P000 198 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 PNPLA6Q8IY17 1366 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 FMO4P31512 558 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 GPR1P46091 355 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RPTNQ6XPR3 784 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 NYAP1Q6ZVC0 841 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 BTN2A1Q7KYR7 527 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF410Q86VK4 478 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 AADATQ8N5Z0 425 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ATXN2LQ8WWM7 1075 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC9A7Q96T83 725 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ME2P23368 584 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 SERPINA4P29622 427 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 CACNA2D1P54289 1103 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 LYPLAL1Q5VWZ2 237 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ZFP28Q8NHY6 868 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 APBA2Q99767 749 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 EXO5Q9H790 373 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 KPNA5O15131 536 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 KRT33AO76009 404 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 UBOX5O94941 541 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 GSSP48637 474 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 TUFMP49411 452 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 C21orf59P57076 290 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 HERVK_113P62684 666 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF276Q8N554 614 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 CLN6Q9NWW5 311 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 A0A096LPK6 155 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 UBE2Q2LH0YL09 131 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 NDUFS2O75306 463 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RECQL5O94762 991 aaPredicted RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 ELK3P41970 407 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 MMP13P45452 471 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 CRY1Q16526 586 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 PACS1Q6VY07 963 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RNF44Q7L0R7 432 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 DHRSXQ8N5I4 330 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 DLG3Q92796 817 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 LENG9Q96B70 501 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 MTFMTQ96DP5 389 aaKnown RBP13□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC25A23Q9BV35 468 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 RPS6KA6Q9UK32 745 aa13□□□□□ -0.33
CCDC88C-204ENST00000389857 USP31Q70CQ4 1352 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TAS1R2Q8TE23 839 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CTDNEP1O95476 244 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TPH1P17752 444 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SPIRE1Q08AE8 756 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 FBXO42Q6P3S6 717 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC27A1Q6PCB7 646 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 EEF1AKMT1Q8WVE0 214 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TEKT5Q96M29 485 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 UNKQ9C0B0 810 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SEMA6BQ9H3T3 888 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 ARL15Q9NXU5 204 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 PAEPP09466 180 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 RPL3P39023 403 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 RHAGQ02094 409 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 LPIN1Q14693 890 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 FBXL19Q6PCT2 694 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF571Q7Z3V5 609 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 ACTL9Q8TC94 416 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CXorf40AQ8TE69 158 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 OMDQ99983 421 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 FAIM2Q9BWQ8 316 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 POLR1EQ9GZS1 481 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 OSGEPQ9NPF4 335 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms