RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 THPOP40225 353 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ALDH18A1P54886 795 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 AIF1P55008 147 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 DSC3Q14574 896 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 INTS6LQ5JSJ4 861 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 STRA8Q7Z7C7 330 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 RBBP8Q99708 897 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 CHST12Q9NRB3 414 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 THAP1Q9NVV9 213 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 SFMBT1Q9UHJ3 866 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 PRR5-ARHGAP8B1AHC4 643 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 M0QZ92 97 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ZNF195O14628 629 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 CAPN15O75808 1086 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 OR4Q2P0C623 313 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 CD1EP15812 388 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 RASSF2P50749 326 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ARHGAP8P85298 464 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 KPNB1Q14974 876 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ACSBG2Q5FVE4 666 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 SPANXN3Q5MJ09 141 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 STXBP5Q5T5C0 1151 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 VWA5B1Q5TIE3 1220 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ARHGAP12Q8IWW6 846 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ENDOVQ8N8Q3 282 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ACMSDQ8TDX5 336 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 TEKT5Q96M29 485 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 DNAJC16Q9Y2G8 782 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 INPP5FQ9Y2H2 1132 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 GYG2O15488 501 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 GP5P40197 560 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 SLC1A6P48664 564 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 PDE1BQ01064 536 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 LPIN1Q14693 890 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 CRLF3Q8IUI8 442 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 CCNJLQ8IV13 435 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 OR6Y1Q8NGX8 325 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 CDKL2Q92772 493 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 CLPTM1LQ96KA5 538 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 SIK2Q9H0K1 926 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 OSER1Q9NX31 292 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 ADAMTS4O75173 837 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 GLRA3O75311 464 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 MT-CYBP00156 380 aaPredicted RBP13.66□□□□□ -0.22
CCDC3-202ENST00000378839 ESRRAP11474 423 aaPredicted RBP13.66□□□□□ -0.22
CCDC3-202ENST00000378839 RPL9P32969 192 aaKnown RBP13.66□□□□□ -0.22
CCDC3-202ENST00000378839 CCNG1P51959 295 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 WASHC2DQ5SRD0 308 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 TRIM42Q8IWZ5 723 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 DNAAF3Q8N9W5 541 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.66□□□□□ -0.22
CCDC3-202ENST00000378839 RBM15BQ8NDT2 890 aaKnown RBP13.66□□□□□ -0.22
CCDC3-202ENST00000378839 RAB3IL1Q8TBN0 382 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 ISL2Q96A47 359 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 ACBD6Q9BR61 282 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 COPG2Q9UBF2 871 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 PLA2G4CQ9UP65 541 aa13.66□□□□□ -0.22
CCDC3-202ENST00000378839 MANSC4A6NHS7 340 aaPredicted RBP13.65□□□□□ -0.22
CCDC3-202ENST00000378839 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.65□□□□□ -0.22
CCDC3-202ENST00000378839 GABRB3P28472 473 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 TYK2P29597 1187 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 RABGAP1LQ5R372 815 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 SCD5Q86SK9 330 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 SOCS4Q8WXH5 440 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 RSPH1Q8WYR4 309 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 CPNE1Q99829 537 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 LRRC40Q9H9A6 602 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 PTPRDP23468 1912 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.65□□□□□ -0.22
CCDC3-202ENST00000378839 CCDC189A1A4V9 331 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 ARHGAP42A6NI28 874 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 G3V2L1 256 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 M0QZQ0 153 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 KRT36O76013 467 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 USP1O94782 785 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 CYP11A1P05108 521 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 CSRP3P50461 194 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 LIMK2P53671 638 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 KDSRQ06136 332 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 TMEM151AQ8N4L1 468 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 NRG4Q8WWG1 115 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 CASP10Q92851 521 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 NAT9Q9BTE0 207 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 UPF3AQ9H1J1 476 aaKnown RBP13.65□□□□□ -0.22
CCDC3-202ENST00000378839 NMUR1Q9HB89 426 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 DCDC2Q9UHG0 476 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 MYLKQ15746 1914 aa13.65□□□□□ -0.22
CCDC3-202ENST00000378839 B2RBV5 119 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 TNFRSF10BO14763 440 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 ASGR1P07306 291 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 ODC1P11926 461 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 PCSK1P29120 753 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 CCNHP51946 323 aaPredicted RBP13.65□□□□□ -0.23
CCDC3-202ENST00000378839 ARL13BQ3SXY8 428 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 GRTP1Q5TC63 336 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 RWDD4Q6NW29 188 aaKnown RBP13.65□□□□□ -0.23
CCDC3-202ENST00000378839 CLEC14AQ86T13 490 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 SAPCD2Q86UD0 394 aa13.65□□□□□ -0.23
CCDC3-202ENST00000378839 MFSD6LQ8IWD5 586 aa13.65□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms