RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 OTOP3Q7RTS5 596 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 PID1Q7Z2X4 250 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 IRF7Q92985 503 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 FBRSL1Q9HCM7 1045 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 IPO11Q9UI26 975 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 CA14Q9ULX7 337 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 FCF1Q9Y324 198 aaKnown RBP9.44□□□□□ -0.9
USP4-202ENST00000351842 CACNA1IQ9P0X4 2223 aa9.44□□□□□ -0.9
USP4-202ENST00000351842 RASA4BC9J798 803 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 RASA4O43374 803 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 HLA-EP13747 358 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 VAV1P15498 845 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 PSMC3P17980 439 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ACTN2P35609 894 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 CKAP4Q07065 602 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 LRRC38Q5VT99 294 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ADGRG2Q8IZP9 1017 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 NTAN1Q96AB6 310 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 HAPLN3Q96S86 360 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ZNF670Q9BS34 389 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 NT5MQ9NPB1 228 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 SPHK2Q9NRA0 654 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 DMGDHQ9UI17 866 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 SPTBN2O15020 2390 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 HLA-FP30511 346 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ARSEP51690 589 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 EPHA5P54756 1037 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 DR1Q01658 176 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 GPS1Q13098 491 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ZNF77Q15935 545 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 SKIDA1Q1XH10 827 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ATP11CQ8NB49 1132 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 LEMD2Q8NC56 503 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 UHMK1Q8TAS1 419 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 TEKT4Q8WW24 435 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 PGAP3Q96FM1 320 aaPredicted RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 THG1LQ9NWX6 298 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 SLCO3A1Q9UIG8 710 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 A0A0U1RQS6 177 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 E7EVH7 732 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 PMPCBO75439 489 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 HEXIM1O94992 359 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 CYP17A1P05093 508 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ADH5P11766 374 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 HOXD9P28356 352 aaPredicted RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 RING1Q06587 406 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 GEN1Q17RS7 908 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 WHAMMP3Q1A5X7 153 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ATXN7L2Q5T6C5 722 aaPredicted RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 FBXO38Q6PIJ6 1188 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ARCQ7LC44 396 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 SCML4Q8N228 414 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 RTL3Q8N8U3 475 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 TSEN2Q8NCE0 465 aaKnown RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 GRIN3AQ8TCU5 1115 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 NAP1L3Q99457 506 aaPredicted RBP9.43□□□□□ -0.9
USP4-202ENST00000351842 DCLK3Q9C098 648 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 EPB41L5Q9HCM4 733 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 ZNF446Q9NWS9 450 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 COMMD8Q9NX08 183 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 MAFFQ9ULX9 164 aa9.43□□□□□ -0.9
USP4-202ENST00000351842 PATJQ8NI35 1801 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 A0A1B0GVM2 712 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 PRR23AA6NEV1 266 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 TCAF2A6NFQ2 919 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 CLGNO14967 610 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 ATP8B1O43520 1251 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 TULP3O75386 442 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 APRTP07741 180 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 SCNN1BP51168 640 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 SLC10A7Q0GE19 358 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 LMAN2Q12907 356 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 DPYSQ14117 519 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 SNX30Q5VWJ9 437 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 ASTLQ6HA08 431 aaPredicted RBP9.42□□□□□ -0.9
USP4-202ENST00000351842 KLHDC10Q6PID8 442 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 BBS12Q6ZW61 710 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 HJURPQ8NCD3 748 aaPredicted RBP9.42□□□□□ -0.9
USP4-202ENST00000351842 SPATA22Q8NHS9 363 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 CSGALNACT1Q8TDX6 532 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 MRRFQ96E11 262 aaKnown RBP9.42□□□□□ -0.9
USP4-202ENST00000351842 ECT2Q9H8V3 914 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 GDE1Q9NZC3 331 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 FBXL21Q9UKT6 434 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 HPCAL4Q9UM19 191 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 APOC4-APOC2K7ER74 178 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 RNF103O00237 685 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 FGF19O95750 216 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 OLFM2O95897 454 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 IGLV3-27P01718 113 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 APOC2P02655 101 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 PIRTP0C851 137 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 SERPINB6P35237 376 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 PLTPP55058 493 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 OXCT1P55809 520 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 GNA12Q03113 381 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 TCEAL1Q15170 157 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 TXNDC11Q6PKC3 985 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 CEP112Q8N8E3 955 aa9.42□□□□□ -0.9
USP4-202ENST00000351842 TFB1MQ8WVM0 346 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms