RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 KHDC1Q4VXA5 237 aaKnown RBP19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TEDDM1Q5T9Z0 273 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 FSTL4Q6MZW2 842 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 FAM171BQ6P995 826 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 CD300LGQ6UXG3 332 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 OTOP3Q7RTS5 596 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 MCUR1Q96AQ8 359 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 EIF4E1BA6NMX2 242 aaKnown RBP19.77■□□□□ 0.76
COL9A3-201ENST00000343916 PROCP04070 461 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 MX2P20592 715 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 SERPINB6P35237 376 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 KDSRQ06136 332 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 NAB1Q13506 487 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 PM20D1Q6GTS8 502 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 SMC1BQ8NDV3 1235 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 ZSCAN18Q8TBC5 510 aaPredicted RBP19.77■□□□□ 0.76
COL9A3-201ENST00000343916 RBBP8Q99708 897 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 ACBD6Q9BR61 282 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 DMAP1Q9NPF5 467 aaPredicted RBP19.77■□□□□ 0.76
COL9A3-201ENST00000343916 NUDT5Q9UKK9 219 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 RAD54BQ9Y620 910 aa19.77■□□□□ 0.76
COL9A3-201ENST00000343916 DFFAO00273 331 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 UBAP2LQ14157 1087 aaKnown RBP19.77■□□□□ 0.75
COL9A3-201ENST00000343916 PPP2R5DQ14738 602 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 WASHC2DQ5SRD0 308 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 STXBP5Q5T5C0 1151 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 CNTD1Q8N815 330 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 ACVR1CQ8NER5 493 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 PIWIL2Q8TC59 973 aaKnown RBP19.77■□□□□ 0.75
COL9A3-201ENST00000343916 ZNF419Q96HQ0 510 aaPredicted RBP19.77■□□□□ 0.75
COL9A3-201ENST00000343916 TEKT5Q96M29 485 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.77■□□□□ 0.755e-7■■□□□ 12.7
COL9A3-201ENST00000343916 RRN3Q9NYV6 651 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 GABRQQ9UN88 632 aa19.77■□□□□ 0.75
COL9A3-201ENST00000343916 MSI1O43347 362 aaKnown RBP19.76■□□□□ 0.75
COL9A3-201ENST00000343916 USP1O94782 785 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 PGGT1BP53609 377 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 GRTP1Q5TC63 336 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 MRPL10Q7Z7H8 261 aaKnown RBP19.76■□□□□ 0.75
COL9A3-201ENST00000343916 TEX9Q8N6V9 391 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 SPATA22Q8NHS9 363 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 ADAM2Q99965 735 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 COPG2Q9UBF2 871 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 SFMBT1Q9UHJ3 866 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 PRR5-ARHGAP8B1AHC4 643 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 B2RBV5 119 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 KPNA6O60684 536 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 GNAZP19086 355 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 ARHGAP8P85298 464 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 IRF9Q00978 393 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 KPNB1Q14974 876 aaKnown RBP19.76■□□□□ 0.75
COL9A3-201ENST00000343916 DCLRE1AQ6PJP8 1040 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 METTL23Q86XA0 190 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 WDR60Q8WVS4 1066 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 BATF3Q9NR55 127 aa19.76■□□□□ 0.75
COL9A3-201ENST00000343916 C20orf96Q9NUD7 363 aaPredicted RBP19.76■□□□□ 0.75
COL9A3-201ENST00000343916 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 NMBRP28336 390 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 LIMK2P53671 638 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 KCNMB4Q86W47 210 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 DPF3Q92784 378 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 PKMYT1Q99640 499 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 FAM167BQ9BTA0 163 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 ZFYVE28Q9HCC9 887 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 TRHDEQ9UKU6 1024 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 NEU3Q9UQ49 428 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 MTSS1O43312 755 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 MT-CYBP00156 380 aaPredicted RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 ASGR1P07306 291 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 SPRP35270 261 aaPredicted RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 ITGA9Q13797 1035 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 FAM91A1Q658Y4 838 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 ITPRIPL1Q6GPH6 555 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 OVOS1Q6IE37 1185 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 WDR75Q8IWA0 830 aaKnown RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 SPDL1Q96EA4 605 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 SORT1Q99523 831 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 IARS2Q9NSE4 1012 aaKnown RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 PNPOQ9NVS9 261 aa19.75■□□□□ 0.75
COL9A3-201ENST00000343916 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.75■□□□□ 0.75
COL9A3-201ENST00000343916 A0A0U1RQF3 1178 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 OR4Q2P0C623 313 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 ACSBG2Q5FVE4 666 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 PAXIP1Q6ZW49 1069 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-201ENST00000343916 MAVSQ7Z434 540 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 RBM15BQ8NDT2 890 aaKnown RBP19.74■□□□□ 0.75
COL9A3-201ENST00000343916 MICAL1Q8TDZ2 1067 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 IRGQQ8WZA9 623 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 CCDC106Q9BWC9 280 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 OXCT2Q9BYC2 517 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-201ENST00000343916 BRD8Q9H0E9 1235 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 NDFIP2Q9NV92 336 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 ERI2A8K979 691 aaKnown RBP19.74■□□□□ 0.75
COL9A3-201ENST00000343916 SERPINE1P05121 402 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 RSPH1Q8WYR4 309 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 SPC25Q9HBM1 224 aa19.74■□□□□ 0.75
COL9A3-201ENST00000343916 TDRD15B5MCY1 1934 aaKnown RBP19.74■□□□□ 0.75
COL9A3-201ENST00000343916 A0A096LPK6 155 aa19.73■□□□□ 0.75
COL9A3-201ENST00000343916 ZNF623O75123 536 aa19.73■□□□□ 0.75
COL9A3-201ENST00000343916 CYP11A1P05108 521 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms