RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 KIAA1024Q9UPX6 916 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 R4GN57 208 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 SPTLC2O15270 562 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 TEX33O43247 280 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 GJA4P35212 333 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 IFNAR2P48551 515 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 FNTBP49356 437 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 ACADVLP49748 655 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 LILRA4P59901 499 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 DPYDQ12882 1025 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 UBXN2BQ14CS0 331 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 CRY1Q16526 586 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 CCDC153Q494R4 210 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 TCERG1LQ5VWI1 586 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 ARCQ7LC44 396 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 RNF10Q8N5U6 811 aaKnown RBP7.55□□□□□ -1.2
ZNF540-202ENST00000343599 GDAP1Q8TB36 358 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 USP13Q92995 863 aaPredicted RBP7.55□□□□□ -1.2
ZNF540-202ENST00000343599 KLHL29Q96CT2 875 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 FIZ1Q96SL8 496 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 FAM86C1Q9NVL1 165 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 DACH1Q9UI36 760 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 SNX12Q9UMY4 172 aa7.55□□□□□ -1.2
ZNF540-202ENST00000343599 SLC38A8A6NNN8 435 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 PRRG1O14668 218 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 TTI1O43156 1089 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 NDUFA10O95299 355 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 BPNT1O95861 308 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 CISD3P0C7P0 127 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 CPA3P15088 417 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 CCNFP41002 786 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 PTDSS1P48651 473 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 OCRLQ01968 901 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 PEX6Q13608 980 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 KPNB1Q14974 876 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 GRAMD4Q6IC98 578 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 RINT1Q6NUQ1 792 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 NAXDQ8IW45 347 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 SCYL1Q96KG9 808 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ZMAT2Q96NC0 199 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 SIKE1Q9BRV8 207 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ABCF3Q9NUQ8 709 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 IL1RAPL1Q9NZN1 696 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 VTI1BQ9UEU0 232 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 RAI2Q9Y5P3 530 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 METTL12A8MUP2 240 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 SART1O43290 800 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 KDM1AO60341 852 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 TDP2O95551 362 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 GRK6P43250 576 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ADARP55265 1226 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ARID5AQ03989 594 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 PNOCQ13519 176 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 TRIM14Q14142 442 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 LIN52Q52LA3 116 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 PDCD4Q53EL6 469 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FBXL19Q6PCT2 694 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 SLC7A5P1Q8MH63 180 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 DAW1Q8N136 415 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 HDDC3Q8N4P3 179 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 UBR7Q8N806 425 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 TRPC4APQ8TEL6 797 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 HAUS1Q96CS2 278 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FOXQ1Q9C009 403 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 MUC3BQ9H195 1237 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 C12orf49Q9H741 205 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 RPF1Q9H9Y2 349 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 NEUROD4Q9HD90 331 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FAM114A2Q9NRY5 505 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FAIMQ9NVQ4 179 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ARHGEF38Q9NXL2 777 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 LHX6Q9UPM6 363 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FAM32AQ9Y421 112 aaKnown RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 FADS3Q9Y5Q0 445 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 CLIC4Q9Y696 253 aa7.54□□□□□ -1.2
ZNF540-202ENST00000343599 EPN1Q9Y6I3 576 aaPredicted RBP7.54□□□□□ -1.2
ZNF540-202ENST00000343599 ICMTO60725 284 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 ASMTLO95671 621 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 HALP42357 657 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 SYKP43405 635 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 DUSP3P51452 185 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-202ENST00000343599 CLCNKBP51801 687 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 EHHADHQ08426 723 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 ZNF844Q08AG5 666 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 TRIM29Q14134 588 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 PSMD6Q15008 389 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 STK38Q15208 465 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 NR6A1Q15406 480 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 ARHGAP17Q68EM7 881 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 PPP4R4Q6NUP7 873 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 LVRNQ6Q4G3 990 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 GAREM2Q75VX8 874 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 SV2AQ7L0J3 742 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 EPM2AIP1Q7L775 607 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-202ENST00000343599 USP37Q86T82 979 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 MICU3Q86XE3 530 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 PALB2Q86YC2 1186 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 GPBAR1Q8TDU6 330 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 PIGOQ8TEQ8 1089 aa7.53□□□□□ -1.2
ZNF540-202ENST00000343599 NOC3LQ8WTT2 800 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms