RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 C9orf64Q5T6V5 341 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 LPCAT2Q7L5N7 544 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 TMC6Q7Z403 805 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 SLFN11Q7Z7L1 901 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 SETD3Q86TU7 594 aaPredicted RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 PYROXD2Q8N2H3 581 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 DEFB119Q8N690 84 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 ARFGAP1Q8N6T3 406 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 GPR161Q8N6U8 529 aaKnown RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 PRCCQ92733 491 aaPredicted RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 PTPRN2Q92932 1015 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 ZNF653Q96CK0 615 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLN3-201ENST00000333496 SMOC1Q9H4F8 434 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 NDFIP2Q9NV92 336 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 VPS28Q9UK41 221 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 USP18Q9UMW8 372 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 LRIG2O94898 1065 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 IGLV3-19P01714 112 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 RHOCP08134 193 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 OR1E1P30953 314 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 MPLP40238 635 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 DHPSP49366 369 aaPredicted RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 VASPP50552 380 aaPredicted RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 RPS14P62263 151 aaKnown RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 RPL6Q02878 288 aaKnown RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 SPDYCQ5MJ68 293 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 SCYL2Q6P3W7 929 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 SLC36A4Q6YBV0 504 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 MUC3BQ9H195 1237 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 RSPH9Q9H1X1 276 aaPredicted RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 WSB2Q9NYS7 404 aaPredicted RBP16.24■□□□□ 0.19
CLN3-201ENST00000333496 FZD10Q9ULW2 581 aa16.24■□□□□ 0.19
CLN3-201ENST00000333496 SNAP91O60641 907 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 ZNF806P0C7X5 589 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 VAV1P15498 845 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 PRR23CQ6ZRP0 262 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 ARMCX6Q7L4S7 300 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 NLRP14Q86W24 1093 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 SLC41A1Q8IVJ1 513 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 FRS2Q8WU20 508 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 DNAJC7Q99615 494 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 FBRSQ9HAH7 460 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 MYO1AQ9UBC5 1043 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 NENFQ9UMX5 172 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 SPTBN4Q9H254 2564 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 EDDM13A0A1B0GTR0 161 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 TARSL2A2RTX5 802 aaKnown RBP16.23■□□□□ 0.19
CLN3-201ENST00000333496 MT-CO1P00395 513 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 MYBL1P10243 752 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 ACADMP11310 421 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 GLDCP23378 1020 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 PSMA2P25787 234 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 CD6P30203 668 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 TRIM14Q14142 442 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 SF3A2Q15428 464 aaKnown RBP16.23■□□□□ 0.19
CLN3-201ENST00000333496 C6orf118Q5T5N4 469 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 SARM1Q6SZW1 724 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 VPS36Q86VN1 386 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 DRC7Q8IY82 874 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 OR7D4Q8NG98 312 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 FNIP1Q8TF40 1166 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 TRIM11Q96F44 468 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 TOE1Q96GM8 510 aaKnown RBP16.23■□□□□ 0.19
CLN3-201ENST00000333496 FAM129BQ96TA1 746 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 THAP2Q9H0W7 228 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 TMEM74BQ9NUR3 256 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 VPS51Q9UID3 782 aa16.23■□□□□ 0.19
CLN3-201ENST00000333496 DOCK9Q9BZ29 2069 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 ILVBLA1L0T0 632 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 ATP9BO43861 1147 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 L1CAMP32004 1257 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 EIF4A3P38919 411 aaKnown RBP16.22■□□□□ 0.19
CLN3-201ENST00000333496 NNMTP40261 264 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 AIF1P55008 147 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 ZNF33AQ06730 810 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 SEMA3BQ13214 749 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 RWDD4Q6NW29 188 aaKnown RBP16.22■□□□□ 0.19
CLN3-201ENST00000333496 ALKBH5Q6P6C2 394 aaKnown RBP16.22■□□□□ 0.19
CLN3-201ENST00000333496 CYP4V2Q6ZWL3 525 aaPredicted RBP16.22■□□□□ 0.19
CLN3-201ENST00000333496 SH2D3CQ8N5H7 860 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 OR8K1Q8NGG5 319 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 ZNF419Q96HQ0 510 aaPredicted RBP16.22■□□□□ 0.19
CLN3-201ENST00000333496 PEBP4Q96S96 227 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 RXFP3Q9NSD7 469 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 TMEM248Q9NWD8 314 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 SLC25A13Q9UJS0 675 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 HS3ST2Q9Y278 367 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 SCINQ9Y6U3 715 aa16.22■□□□□ 0.19
CLN3-201ENST00000333496 CEP250Q9BV73 2442 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 PATE3B3GLJ2 98 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 GDF9O60383 454 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ZMPSTE24O75844 475 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 SRCP12931 536 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 RHOQP17081 205 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ITPKAP23677 461 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 ADKP55263 362 aaKnown RBP16.21■□□□□ 0.19
CLN3-201ENST00000333496 KRT83P78385 493 aa16.21■□□□□ 0.19
CLN3-201ENST00000333496 GNA12Q03113 381 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms