RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RPL10LQ96L21 214 aaKnown RBP16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 MRGPRX3Q96LB0 322 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 SPON2Q9BUD6 331 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 IRF2BPLQ9H1B7 796 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 SLC25A13Q9UJS0 675 aa16.3■□□□□ 0.2
CCDC28A-201ENST00000332797 A0A0A6YYK5 440 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 SYNCRIPO60506 623 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 SRPRAP08240 638 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 GNA12Q03113 381 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 KRT81Q14533 505 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 CCDC112Q8NEF3 446 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 HMGB4Q8WW32 186 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ANP32BQ92688 251 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 PSMB7Q99436 277 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 C2orf49Q9BVC5 232 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 FAM126AQ9BYI3 521 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 TMEM245Q9H330 911 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ATP13A1Q9HD20 1204 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 FAM86C1Q9NVL1 165 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ZSCAN32Q9NX65 697 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 CWC15Q9P013 229 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 BCCIPQ9P287 314 aaKnown RBP eCLIP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 MUC6Q6W4X9 2439 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 H3BRJ5 948 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 SNAP91O60641 907 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 RAMP2O60895 175 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 HOXA6P31267 233 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ACVRL1P37023 503 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ARL4AP40617 200 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF135P52742 658 aaPredicted RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 HADHBP55084 474 aaKnown RBP16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 CDH6P55285 790 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 ATP13A4Q4VNC1 1196 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 IL31Q6EBC2 164 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 DCAF4L2Q8NA75 395 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 MYO19Q96H55 970 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 PCDH18Q9HCL0 1135 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 KLHL11Q9NVR0 708 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 VPS51Q9UID3 782 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 HYOU1Q9Y4L1 999 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 R4GN57 208 aa16.29■□□□□ 0.2
CCDC28A-201ENST00000332797 MYO18AQ92614 2054 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 WASH4PA8MWX3 477 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 TTC34A8MYJ7 566 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 CBX4O00257 560 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 ZBTB24O43167 697 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 BUB1O43683 1085 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 SPOPO43791 374 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 BUB1BO60566 1050 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 KRT7P08729 469 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 GLDCP23378 1020 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 ETFBP38117 255 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 NNMTP40261 264 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 NAP1L1P55209 391 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 POLD3Q15054 466 aaPredicted RBP16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 ZFYVE27Q5T4F4 411 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 WDR5BQ86VZ2 330 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 LONP2Q86WA8 852 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 ZNF354CQ86Y25 554 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 LRRC8AQ8IWT6 810 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 PGBD3Q8N328 593 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 TXLNBQ8N3L3 684 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 KDM1BQ8NB78 822 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 MDGA1Q8NFP4 955 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 ATRIPQ8WXE1 791 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 NELL1Q92832 810 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 TPSD1Q9BZJ3 242 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 LACRTQ9GZZ8 138 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 MAGEH1Q9H213 219 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 MTG2Q9H4K7 406 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 CD248Q9HCU0 757 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 SLCO3A1Q9UIG8 710 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 SALL4Q9UJQ4 1053 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 PCDHGA2Q9Y5H1 932 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 DUSP10Q9Y6W6 482 aa16.28■□□□□ 0.2
CCDC28A-201ENST00000332797 AXIN1O15169 862 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 PJA2O43164 708 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 ARHGAP6O43182 974 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 TNNT1P13805 278 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 ERCC2P18074 760 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 GABRG2P18507 467 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 COMTP21964 271 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 SLC1A1P43005 524 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 HCAR3P49019 387 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 DPYSQ14117 519 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 ZC3H14Q6PJT7 736 aaKnown RBP16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 LINGO4Q6UY18 593 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 POLNQ7Z5Q5 900 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 RASSF3Q86WH2 238 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 KCTD6Q8NC69 237 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 ARHGEF2Q92974 986 aaKnown RBP16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 CSPG4P5Q96PW8 444 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 SLC6A17Q9H1V8 727 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 GOLPH3Q9H4A6 298 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 NOL6Q9H6R4 1146 aaKnown RBP16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 DONSONQ9NYP3 566 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 EBF1Q9UH73 591 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 SUN2Q9UH99 717 aa16.27■□□□□ 0.19
CCDC28A-201ENST00000332797 A0A0U1RQJ8 604 aa16.26■□□□□ 0.19
CCDC28A-201ENST00000332797 BTNL10A8MVZ5 291 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms