RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MSI1O43347 362 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 GUCY1B2O75343 617 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 AGR2O95994 175 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 IFIT1P09914 478 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CTSAP10619 480 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PAX3P23760 479 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CHRNA5P30532 468 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 GJC1P36383 396 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 GPD2P43304 727 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CPA2P48052 419 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 ID2Q02363 134 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 SRSF4Q08170 494 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 TBX2Q13207 712 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 BYSLQ13895 437 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 GALNT3Q14435 633 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 EZH2Q15910 746 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PLK5Q496M5 336 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 ARL13AQ5H913 290 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 FAM171A1Q5VUB5 890 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 JAKMIP3Q5VZ66 844 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PAPD7Q5XG87 772 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 ISM2Q6H9L7 571 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 LRRC8DQ7L1W4 858 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CNGA4Q8IV77 575 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 BRSK2Q8IWQ3 736 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 ESX1Q8N693 406 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 NTN5Q8WTR8 489 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 HTRA1Q92743 480 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PPM1MQ96MI6 270 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 FRG2BQ96QU4 278 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 SIGLEC11Q96RL6 698 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CD180Q99467 661 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 SH2D3AQ9BRG2 576 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PIMREGQ9BSJ6 248 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 TUBB6Q9BUF5 446 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 QTRT1Q9BXR0 403 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PRSS22Q9GZN4 317 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 STN1Q9H668 368 aaKnown RBP3.67□□□□□ -1.82
HMGB1-201ENST00000326004 Q9N2J8 555 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 ANAPC4Q9UJX5 808 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 TBX20Q9UMR3 447 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 FRMD4BQ9Y2L6 1034 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 TMEM98Q9Y2Y6 226 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 CKAP5Q14008 2032 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 SH2D7A6NKC9 451 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 CGB1A6NKQ9 187 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 PRPF4O43172 522 aaKnown RBP eCLIP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 HBP1O60381 514 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 CNOT3O75175 753 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 PRR35P0CG20 571 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 KELP23276 732 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 TYK2P29597 1187 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 HNF1BP35680 557 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 PGM1P36871 562 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 ARHGAP25P42331 645 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 ZBTB16Q05516 673 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 PGM5Q15124 567 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 SRSF7Q16629 238 aaKnown RBP eCLIP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 C5orf22Q49AR2 442 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 GJB7Q6PEY0 223 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 SRRM1Q8IYB3 904 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 LSM14AQ8ND56 463 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 PIGOQ8TEQ8 1089 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 C2CD4CQ8TF44 421 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 NOC3LQ8WTT2 800 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 DDB2Q92466 427 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 STAMQ92783 540 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 EVI5LQ96CN4 794 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 HVCN1Q96D96 273 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 RNFT2Q96EX2 444 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 EIF2AK1Q9BQI3 630 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 SCNM1Q9BWG6 230 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 NPLQ9BXD5 320 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 CTDSP1Q9GZU7 261 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.66□□□□□ -1.822e-6■■■■□ 20
HMGB1-201ENST00000326004 TMEM45AQ9NWC5 275 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 ALKBH4Q9NXW9 302 aa3.66□□□□□ -1.82
HMGB1-201ENST00000326004 IFT80Q9P2H3 777 aaPredicted RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 CNOT7Q9UIV1 285 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 AGO2Q9UKV8 859 aaKnown RBP3.66□□□□□ -1.82
HMGB1-201ENST00000326004 KIR2DS5A0A0G2JLQ3 304 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 GOLGA6L10A0A0M3HER8 536 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 CXorf65A6NEN9 183 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FAM90A7PA6NKC0 464 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FAM90A22PA8MWA6 464 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FAM90A12PA8MX19 464 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FAM90A23PA8MXZ1 464 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 KIR2DS3K7RE56 304 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 RHODO00212 210 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 STRNO43815 780 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TLR2O60603 784 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 TULP3O75386 442 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 WNT1P04628 370 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 FCGR2AP12318 317 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 PRKCHP24723 683 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 CIITAP33076 1130 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 SKIV2L2P42285 1042 aaKnown RBP3.65□□□□□ -1.83
HMGB1-201ENST00000326004 CYP2J2P51589 502 aa3.65□□□□□ -1.83
HMGB1-201ENST00000326004 C21orf58P58505 322 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms