RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PGAM1P18669 254 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 UBA1P22314 1058 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 ETFBP38117 255 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 DGCR6Q14129 220 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ATG14Q6ZNE5 492 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ARCQ7LC44 396 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ZSWIM2Q8NEG5 633 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 MAGEE2Q8TD90 523 aaPredicted RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 UTP15Q8TED0 518 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 HSD17B14Q9BPX1 270 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 MTG1Q9BT17 334 aaPredicted RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 WDR12Q9GZL7 423 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 LRRC19Q9H756 370 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ANKRD6Q9Y2G4 727 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 TCF3P15923 654 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 LRPAP1P30533 357 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PPP3CCP48454 512 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 TWF1Q12792 350 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 FAM117BQ6P1L5 589 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 SLC27A1Q6PCB7 646 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 KATNAL2Q8IYT4 538 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 C4orf32Q8N8J7 132 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 COLGALT1Q8NBJ5 622 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 COX4I2Q96KJ9 171 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 FOPNLQ96NB1 174 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PCDHB8Q9UN66 801 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 RWDD3Q9Y3V2 267 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 TRIM38O00635 465 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 EPHB6O15197 1021 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 TSHRP16473 764 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ADORA2AP29274 412 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 TMC7Q7Z402 723 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PSMA8Q8TAA3 256 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ITFG1Q8TB96 612 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 EPS8L1Q8TE68 723 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 HPS1Q92902 700 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 QKIQ96PU8 341 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS39-201ENST00000318006 SYTL2Q9HCH5 934 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 DYRK4Q9NR20 520 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 EHD3Q9NZN3 535 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 MBD2Q9UBB5 411 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 LIMD1Q9UGP4 676 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 VANGL2Q9ULK5 521 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 KPNA6O60684 536 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 VPS26AO75436 327 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PAEPP09466 180 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 MSH3P20585 1137 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 DLG4P78352 724 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ZRANB3Q5FWF4 1079 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS39-201ENST00000318006 RIOX2Q8IUF8 465 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 SLC9A9Q8IVB4 645 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 RPRD1AQ96P16 312 aaPredicted RBP11.7□□□□□ -0.54
VPS39-201ENST00000318006 TBCBQ99426 244 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 RIBC2Q9H4K1 309 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 NMRAL1Q9HBL8 299 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 CIDEBQ9UHD4 219 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 DSEQ9UL01 958 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 FZD1Q9UP38 647 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 IFNA14P01570 189 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ABCB1P08183 1280 aaPredicted RBP11.7□□□□□ -0.54
VPS39-201ENST00000318006 CCDC166P0CW27 439 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ATXN8OSP0DMR3 200 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 IRF1P10914 325 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 USP46P62068 366 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 VGLL4Q14135 290 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 SYTL3Q4VX76 610 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 DGKKQ5KSL6 1271 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 FOXR2Q6PJQ5 311 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PQLC1Q8N2U9 271 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 KAT5Q92993 513 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PPP1R14BQ96C90 147 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 TMEM134Q9H6X4 195 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 ENTPD7Q9NQZ7 604 aa11.7□□□□□ -0.54
VPS39-201ENST00000318006 PRPF19Q9UMS4 504 aaKnown RBP11.7□□□□□ -0.54
VPS39-201ENST00000318006 RGSL1A5PLK6 1076 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PIGNO95427 931 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 SPATA31C1P0DKV0 1188 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 MAGEA10P43363 369 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 FCHO2Q0JRZ9 810 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PAN2Q504Q3 1202 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 SPANXN3Q5MJ09 141 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 TYW3Q6IPR3 259 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 AADACL2Q6P093 401 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 AKAP14Q86UN6 197 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 NT5DC4Q86YG4 428 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PCSK9Q8NBP7 692 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 FBXO6Q9NRD1 293 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 SPASTQ9UBP0 616 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 MED1Q15648 1581 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 WDR27A2RRH5 827 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 LACTBL1A8MY62 500 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PSMD12O00232 456 aaPredicted RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 KRT6AP02538 564 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ITGB5P18084 799 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 EIF4BP23588 611 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 IL12AP29459 219 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 PBX1P40424 430 aa11.69□□□□□ -0.54
VPS39-201ENST00000318006 ALDH7A1P49419 539 aaKnown RBP11.69□□□□□ -0.54
VPS39-201ENST00000318006 MAP1SQ66K74 1059 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms