RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 ART5Q96L15 291 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 UBE2OQ9C0C9 1292 aaKnown RBP12.84□□□□□ -0.35
USP38-201ENST00000307017 NCKIPSDQ9NZQ3 722 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 MYBL2P10244 700 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 NFIAQ12857 509 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SPIDRQ14159 915 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 EDRF1Q3B7T1 1238 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 CCDC153Q494R4 210 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 CBWD6Q4V339 395 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ZNF540Q8NDQ6 660 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 VANGL1Q8TAA9 524 aaPredicted RBP12.84□□□□□ -0.35
USP38-201ENST00000307017 PHACTR1Q9C0D0 580 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 NUAK2Q9H093 628 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ZMYND8Q9ULU4 1186 aaPredicted RBP12.84□□□□□ -0.35
USP38-201ENST00000307017 GJB1P08034 283 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ABL2P42684 1182 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 IL18R1Q13478 541 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 MTFR1Q15390 333 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 RNF220Q5VTB9 566 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SYT12Q8IV01 421 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ENGASEQ8NFI3 743 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 OSER1Q9NX31 292 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 AATKQ6ZMQ8 1374 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 FARP2O94887 1054 aaPredicted RBP12.84□□□□□ -0.35
USP38-201ENST00000307017 SPATA31D3P0C874 917 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 RARGP13631 454 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 CYP24A1Q07973 514 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 MED22Q15528 200 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SPATA31D4Q6ZUB0 917 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 LGI2Q8N0V4 545 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ZBTB8BQ8NAP8 495 aaPredicted RBP12.84□□□□□ -0.35
USP38-201ENST00000307017 TMPRSS4Q9NRS4 437 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 IQCF5A8MTL0 148 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SLC2A3P11169 496 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 ALX1Q15699 326 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 DGUOKQ16854 277 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SNAP47Q5SQN1 464 aa12.84□□□□□ -0.35
USP38-201ENST00000307017 SHANK2Q9UPX8 1470 aa12.83□□□□□ -0.35
USP38-201ENST00000307017 ANKDD1BA6NHY2 528 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 LDLRP01130 860 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 LAMTOR4Q0VGL1 99 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 USP4Q13107 963 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 PDK3Q15120 406 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 PALB2Q86YC2 1186 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 DCBLD1Q8N8Z6 715 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 ATP6V1C2Q8NEY4 427 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 CEP295NLQ96MC4 621 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 EFCAB6Q5THR3 1501 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 GRXCR2A6NFK2 248 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 CLDN5O00501 218 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 AP3D1O14617 1153 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 MARCKSL1P49006 195 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 FXR2P51116 673 aaKnown RBP eCLIP12.83□□□□□ -0.364e-6■■■■□ 21.2
USP38-201ENST00000307017 CXorf57Q6NSI4 855 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 GFM1Q96RP9 751 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 KCNS3Q9BQ31 491 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 WDR41Q9HAD4 459 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 RASSF1Q9NS23 344 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 ADAM30Q9UKF2 790 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 HES2Q9Y543 173 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 SERPINH1P50454 418 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 CCR3P51677 355 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 HIRAP54198 1017 aaPredicted RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 MYBPC1Q00872 1141 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 TTLL9Q3SXZ7 439 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 SPANXN2Q5MJ10 180 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 RAD51AP1Q96B01 352 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 MBOAT7Q96N66 472 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 SLCO1B3Q9NPD5 702 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 KCNQ5Q9NR82 932 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 SH3GLB1Q9Y371 365 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 MAP3K13O43283 966 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 C9P02748 559 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 PCSK1P29120 753 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 KRT6CP48668 564 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 PTPAQ15257 358 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 BRINP3Q76B58 766 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 TMC7Q7Z402 723 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 DCP1BQ8IZD4 617 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 POF1BQ8WVV4 589 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 FANCEQ9HB96 536 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 CNOT6Q9ULM6 557 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 KANSL1LA0AUZ9 987 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 MED26O95402 600 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 LCA5LO95447 670 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 NDUFAF6Q330K2 333 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 SLC39A12Q504Y0 691 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 ZC3H12AQ5D1E8 599 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 NOL9Q5SY16 702 aaKnown RBP12.83□□□□□ -0.36
USP38-201ENST00000307017 CYP4Z2PQ8N1L4 340 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 UBXN6Q9BZV1 441 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 TKTL2Q9H0I9 626 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 EQTNQ9NQ60 294 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 PNPLA7Q6ZV29 1317 aa12.83□□□□□ -0.36
USP38-201ENST00000307017 CCDC182A6NF36 153 aa12.82□□□□□ -0.36
USP38-201ENST00000307017 WTIPA6NIX2 430 aaPredicted RBP12.82□□□□□ -0.36
USP38-201ENST00000307017 PSMD12O00232 456 aaPredicted RBP12.82□□□□□ -0.36
USP38-201ENST00000307017 TNFAIP8O95379 198 aa12.82□□□□□ -0.36
USP38-201ENST00000307017 YAP1P46937 504 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms