RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GPR182O15218 404 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 IGHA2P01877 340 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 RPL9P32969 192 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 TRIM32Q13049 653 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 ITGA9Q13797 1035 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 STXBP5Q5T5C0 1151 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 IFNL1Q8IU54 200 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 PIWIL2Q8TC59 973 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 SOCS4Q8WXH5 440 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 ARHGAP39Q9C0H5 1083 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 IARS2Q9NSE4 1012 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 COPG2Q9UBF2 871 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 SFMBT1Q9UHJ3 866 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 HTTP42858 3142 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 MSI1O43347 362 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 NMBRP28336 390 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 ACSBG2Q5FVE4 666 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 INTS6LQ5JSJ4 861 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 METTL23Q86XA0 190 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 WDR75Q8IWA0 830 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 CNTD1Q8N815 330 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 RBM15BQ8NDT2 890 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 TEKT5Q96M29 485 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 CCDC106Q9BWC9 280 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 RAD54BQ9Y620 910 aa18.74■□□□□ 0.59
SHKBP1-201ENST00000291842 MANSC4A6NHS7 340 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 USP1O94782 785 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 SAT1P21673 171 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 SERPINB6P35237 376 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 SPRP35270 261 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 PGM1P36871 562 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 CLNS1AP54105 237 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 MGAT3Q09327 533 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 CRHR2Q13324 411 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 VWA5B1Q5TIE3 1220 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 PM20D1Q6GTS8 502 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 FAM171BQ6P995 826 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 CD300LGQ6UXG3 332 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 KCNMB4Q86W47 210 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 MOCOSQ96EN8 888 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 CLPTM1LQ96KA5 538 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 SORT1Q99523 831 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ACBD6Q9BR61 282 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 OXCT2Q9BYC2 517 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 DMAP1Q9NPF5 467 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ACSS2Q9NR19 701 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 TTC3P53804 2025 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 KRT36O76013 467 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 MT-CYBP00156 380 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 SERPINE1P05121 402 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 RALBP11234 206 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 PTDSS1P48651 473 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ITPRIPL1Q6GPH6 555 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 MAVSQ7Z434 540 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ENDOVQ8N8Q3 282 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ZSCAN18Q8TBC5 510 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 TRIB2Q92519 343 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ZNF419Q96HQ0 510 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 ADAM2Q99965 735 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 RRN3Q9NYV6 651 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 TRHDEQ9UKU6 1024 aa18.73■□□□□ 0.59
SHKBP1-201ENST00000291842 OR4Q2P0C623 313 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 CPA3P15088 417 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 LIMK2P53671 638 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 TAF11Q15544 211 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 DCLRE1AQ6PJP8 1040 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 FAM161BQ96MY7 647 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 GABRQQ9UN88 632 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 SCN10AQ9Y5Y9 1956 aa18.72■□□□□ 0.59
SHKBP1-201ENST00000291842 A0A096LPK6 155 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 EIF4E1BA6NMX2 242 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 MEI4A8MW99 385 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 MTSS1O43312 755 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 RCN1Q15293 331 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 FAM91A1Q658Y4 838 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 OVOS1Q6IE37 1185 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 KDELC2Q7Z4H8 507 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 MRPL10Q7Z7H8 261 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 AGR3Q8TD06 166 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 DTX3LQ8TDB6 740 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 DCLRE1BQ9H816 532 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 NDFIP2Q9NV92 336 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 CPSF2Q9P2I0 782 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 TAGLN3Q9UI15 199 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 SERPINA6P08185 405 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 CYBAP13498 195 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 SERPINB8P50452 374 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 MXRA7P84157 204 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 MPP3Q13368 585 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 TUBB3Q13509 450 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 NAA25Q14CX7 972 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 INSCQ1MX18 579 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 TRIM68Q6AZZ1 485 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 PPP4R1Q8TF05 950 aa18.71■□□□□ 0.59
SHKBP1-201ENST00000291842 KPNA6O60684 536 aa18.7■□□□□ 0.58
SHKBP1-201ENST00000291842 MOCS2O96007 188 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-201ENST00000291842 ASGR1P07306 291 aa18.7■□□□□ 0.58
SHKBP1-201ENST00000291842 ABCE1P61221 599 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-201ENST00000291842 USP4Q13107 963 aa18.7■□□□□ 0.58
SHKBP1-201ENST00000291842 NAPRTQ6XQN6 538 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms