RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PPP1R9BQ96SB3 815 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 FAM129BQ96TA1 746 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 PDCL3Q9H2J4 239 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 EBF2Q9HAK2 575 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 GDF3Q9NR23 364 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 VPS28Q9UK41 221 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 AJAP1Q9UKB5 411 aaPredicted RBP13.14□□□□□ -0.31
CD44-203ENST00000278386 PCDHGC3Q9UN70 934 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 ACACAQ13085 2346 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 LAMA5O15230 3695 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 ANKRD11Q6UB99 2663 aaPredicted RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 TDRD6O60522 2096 aaKnown RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 GTPBP10A4D1E9 387 aaKnown RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 FAM149AA5PLN7 773 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 C1QTNF3-AMACRE9PGA6 284 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 M0QYT0 321 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 PNMA6AP0CW24 399 aaPredicted RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 ZNF18P17022 549 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 PON1P27169 355 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 MAT2AP31153 395 aaKnown RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 DRD3P35462 400 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 SULT1E1P49888 294 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 IRAK1P51617 712 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 METAP1P53582 386 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 SNX16P57768 344 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 UBE2HP62256 183 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 AUHQ13825 339 aaKnown RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 KCNJ12Q14500 433 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 PTPN20Q4JDL3 420 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 PRAMEF14Q5SWL7 426 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 FAM46CQ5VWP2 391 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 C19orf48Q6RUI8 117 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 OLFML1Q6UWY5 402 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 DHRS13Q6UX07 377 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 Q6ZVU0 165 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 WDTC1Q8N5D0 677 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 SIK2Q9H0K1 926 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 MUC3BQ9H195 1237 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 PLCB1Q9NQ66 1216 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 DNAJC12Q9UKB3 198 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 TPX2Q9ULW0 747 aaKnown RBP13.13□□□□□ -0.31
CD44-203ENST00000278386 HS3ST4Q9Y661 456 aa13.13□□□□□ -0.31
CD44-203ENST00000278386 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 FAM170AA1A519 330 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 PES1O00541 588 aaKnown RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 ENC1O14682 589 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 YKT6O15498 198 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 RTN2O75298 545 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 PAGE1O75459 146 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 DKK1O94907 266 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 CAPNS1P04632 268 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 RHOCP08134 193 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 PRKCSHP14314 528 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 EPHA8P29322 1005 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 NOS2P35228 1153 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 ARRB1P49407 418 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 SLC6A3Q01959 620 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 MTA1Q13330 715 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 ZNF177Q13360 481 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 EIF4EBP2Q13542 120 aaPredicted RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 MAN2A1Q16706 1144 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 NAPEPLDQ6IQ20 393 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 SLC26A9Q7LBE3 791 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 PRPF39Q86UA1 669 aaKnown RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 SLC47A2Q86VL8 602 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 FAM114A1Q8IWE2 563 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 OR52K2Q8NGK3 314 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 FRS2Q8WU20 508 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 CNDP2Q96KP4 475 aaKnown RBP13.12□□□□□ -0.31
CD44-203ENST00000278386 STAP1Q9ULZ2 295 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 ZFYVE26Q68DK2 2539 aa13.12□□□□□ -0.31
CD44-203ENST00000278386 A0A1W2PR77 199 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 CBX4O00257 560 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 WNT9AO14904 365 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 SLC7A4O43246 635 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 PLRG1O43660 514 aaKnown RBP13.11□□□□□ -0.31
CD44-203ENST00000278386 CLDN11O75508 207 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 LDOC1O95751 146 aaPredicted RBP13.11□□□□□ -0.31
CD44-203ENST00000278386 HOXB3P14651 431 aaPredicted RBP13.11□□□□□ -0.31
CD44-203ENST00000278386 PLK1P53350 603 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 CDH4P55283 916 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 NXPH1P58417 271 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 RNASE9P60153 205 aaKnown RBP13.11□□□□□ -0.31
CD44-203ENST00000278386 RAPGEF1Q13905 1077 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 DLG2Q15700 870 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 OXR1Q8N573 874 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 SH2D3CQ8N5H7 860 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 EID2Q8N6I1 236 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 PIP4K2CQ8TBX8 421 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 CCDC114Q96M63 670 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 FEM1AQ9BSK4 669 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 TKTL2Q9H0I9 626 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 SIX2Q9NPC8 291 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 PIGVQ9NUD9 493 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 SARDHQ9UL12 918 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 RAXQ9Y2V3 346 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 GPSM3Q9Y4H4 160 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 APC2O95996 2303 aa13.11□□□□□ -0.31
CD44-203ENST00000278386 DSPP15924 2871 aaKnown RBP13.1□□□□□ -0.31
CD44-203ENST00000278386 TLR4O00206 839 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms