RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GUCA1BQ9UMX6 200 aa13.08□□□□□ -0.31
SS18-202ENST00000269138 ERVW-1Q9UQF0 538 aa13.08□□□□□ -0.31
SS18-202ENST00000269138 RAD54BQ9Y620 910 aa13.08□□□□□ -0.31
SS18-202ENST00000269138 STON1Q9Y6Q2 735 aa13.08□□□□□ -0.31
SS18-202ENST00000269138 FGF10O15520 208 aaPredicted RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 LAMTOR5O43504 91 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 GALR2O43603 387 aaPredicted RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 ATP5BP06576 529 aaKnown RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 CCDC175P0C221 793 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 HLA-EP13747 358 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 COL9A1P20849 921 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 PRKCHP24723 683 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 ARL4AP40617 200 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 MARCKSL1P49006 195 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 ECT2LQ008S8 904 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 FNDC3BQ53EP0 1204 aaKnown RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 ZFYVE27Q5T4F4 411 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 LRRC38Q5VT99 294 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 KIAA1211LQ6NV74 962 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 MAMSTRQ6ZN01 415 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 SYT13Q7L8C5 426 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 TP53INP2Q8IXH6 220 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 RHOT1Q8IXI2 618 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 KMT2EQ8IZD2 1858 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 TXLNBQ8N3L3 684 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 KRT35Q92764 455 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 ARHGEF2Q92974 986 aaKnown RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 ACDQ96AP0 544 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 MYO19Q96H55 970 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 CELF6Q96J87 481 aaKnown RBP13.08□□□□□ -0.32
SS18-202ENST00000269138 IER2Q9BTL4 223 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 CALN1Q9BXU9 219 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 MTG2Q9H4K7 406 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 RETREG1Q9H6L5 497 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 VPS51Q9UID3 782 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 PLA2G4CQ9UP65 541 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 PPP2R2CQ9Y2T4 447 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 ACTL7AQ9Y615 435 aa13.08□□□□□ -0.32
SS18-202ENST00000269138 DOCK4Q8N1I0 1966 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 A0A1W2PQF6 199 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 LRRD1A4D1F6 860 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 C3orf70A6NLC5 250 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 K7ESF4 209 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 DCLK1O15075 740 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 RAMP2O60895 175 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 PALMO75781 387 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ZMPSTE24O75844 475 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 MT-CO1P00395 513 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 KRT1P04264 644 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ASLP04424 464 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 KDELR1P24390 212 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 CCR3P51677 355 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ZNF135P52742 658 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 CSTF1Q05048 431 aaKnown RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 ENPP2Q13822 863 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 POLD3Q15054 466 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 PDK2Q15119 407 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 HSF5Q4G112 596 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 EOGTQ5NDL2 527 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 SERPINA13PQ6UXR4 307 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 LINGO4Q6UY18 593 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ZNF783Q6ZMS7 281 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 TRMT11Q7Z4G4 463 aaKnown RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 UMODL1-AS1Q8N2C9 162 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 NPWQ8N729 165 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 PCDH19Q8TAB3 1148 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 KIAA1524Q8TCG1 905 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 RNF25Q96BH1 459 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 HMCESQ96FZ2 354 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 CALR3Q96L12 384 aaKnown RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 HHIPQ96QV1 700 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 PPP1R9BQ96SB3 815 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 GABRG3Q99928 467 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ACE2Q9BYF1 805 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 TMEM245Q9H330 911 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 ATP13A1Q9HD20 1204 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 LZTFL1Q9NQ48 299 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 PRMT8Q9NR22 394 aaPredicted RBP13.07□□□□□ -0.32
SS18-202ENST00000269138 SLC8A2Q9UPR5 921 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 CAPN6Q9Y6Q1 641 aa13.07□□□□□ -0.32
SS18-202ENST00000269138 CACNA1IQ9P0X4 2223 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 MYO18AQ92614 2054 aaKnown RBP13.06□□□□□ -0.32
SS18-202ENST00000269138 ZNF318Q5VUA4 2279 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 TTC34A8MYJ7 566 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 RASA4BC9J798 803 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 CBX4O00257 560 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 RASA4O43374 803 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 TDGF1P13385 188 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 HOXB2P14652 356 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 PXNP49023 591 aaPredicted RBP13.06□□□□□ -0.32
SS18-202ENST00000269138 DMWDQ09019 674 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 CCDC173Q0VFZ6 552 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 ANGPT1Q15389 498 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 CRY1Q16526 586 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 ANKRD20A8PQ5CZ79 823 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 IL31Q6EBC2 164 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 SDE2Q6IQ49 451 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 LEKR1Q6ZMV7 388 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 NT5DC3Q86UY8 548 aa13.06□□□□□ -0.32
SS18-202ENST00000269138 ARHGAP12Q8IWW6 846 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms