RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 STXBP5Q5T5C0 1151 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ATG16L1Q676U5 607 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF280DQ6N043 979 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 MSANTD2Q6P1R3 559 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 CYB5D1Q6P9G0 228 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ATP2A3Q93084 1043 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ERP27Q96DN0 273 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 CPNE1Q99829 537 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 IL22Q9GZX6 179 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 MYLK2Q9H1R3 596 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC17A6Q9P2U8 582 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 NUDT5Q9UKK9 219 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 CHKBQ9Y259 395 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 TLR6Q9Y2C9 796 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 AAR2Q9Y312 384 aaKnown RBP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 FAM237BA0A1B0GVD1 139 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 E9PAM4 449 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 BIRC5O15392 142 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 ITGA2BP08514 1039 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 GRK4P32298 578 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 GP5P40197 560 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 GPR15P49685 360 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 CDH17Q12864 832 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 GRTP1Q5TC63 336 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 FAM171A1Q5VUB5 890 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 SDHAF4Q5VUM1 108 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 TIGD7Q6NT04 549 aaPredicted RBP13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 CES3Q6UWW8 571 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 KYAT3Q6YP21 454 aaKnown RBP13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 NLRP9Q7RTR0 991 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 TMEM135Q86UB9 458 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 NUDCD3Q8IVD9 361 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 ARHGAP12Q8IWW6 846 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 STKLD1Q8NE28 680 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 ZSCAN18Q8TBC5 510 aaPredicted RBP13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 RAB3IL1Q8TBN0 382 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 USP33Q8TEY7 942 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 E2F7Q96AV8 911 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 KLHL29Q96CT2 875 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 C1orf74Q96LT6 269 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 PGLYRP2Q96PD5 576 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 PPP1R2P1Q96PQ5 205 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 SEZ6LQ9BYH1 1024 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 LRFN2Q9ULH4 789 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 PSAT1Q9Y617 370 aa13.21□□□□□ -0.3
SPTLC1-201ENST00000262554 ENPP3O14638 875 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 TPP1O14773 563 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 MATN3O15232 486 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 NBNO60934 754 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 GLRA3O75311 464 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ANXA9O76027 345 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 UNC5CO95185 931 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ALDOAP04075 364 aaKnown RBP13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ALDH2P05091 517 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 TMPRSS15P98073 1019 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ARHGEF6Q15052 776 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ANKRD20A4Q4UJ75 823 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ARHGAP36Q6ZRI8 547 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 TBC1D1Q86TI0 1168 aaPredicted RBP13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 CNTD1Q8N815 330 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 RTL3Q8N8U3 475 aaKnown RBP13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ANKLE1Q8NAG6 615 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 RFWD2Q8NHY2 731 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 FCRL3Q96P31 734 aaPredicted RBP13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 SLC39A8Q9C0K1 460 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 OSER1Q9NX31 292 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 FNIP2Q9P278 1114 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 DCDC2Q9UHG0 476 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 DCTN4Q9UJW0 460 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 HS3ST4Q9Y661 456 aa13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 NYNRINQ9P2P1 1898 aaKnown RBP13.2□□□□□ -0.3
SPTLC1-201ENST00000262554 ATP9BO43861 1147 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CACNG3O60359 315 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 MAFKO60675 156 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 NQO1P15559 274 aaKnown RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 MLLT6P55198 1093 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 TBX4P57082 545 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ELF3P78545 371 aaPredicted RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 MRPL58Q14197 206 aaKnown RBP13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 DBN1Q16643 649 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 PLEKHG4Q58EX7 1191 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 SPDYAQ5MJ70 313 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CERCAMQ5T4B2 595 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 OTOP3Q7RTS5 596 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CCDC91Q7Z6B0 441 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 LRRC49Q8IUZ0 686 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 KLHDC8BQ8IXV7 354 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 DBF4BQ8NFT6 615 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 CASD1Q96PB1 797 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 FCRL5Q96RD9 977 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 IL12RB2Q99665 862 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 APOL2Q9BQE5 337 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 MECRQ9BV79 373 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 GLOD4Q9HC38 313 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 UBP1Q9NZI7 540 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 IL1RAPL1Q9NZN1 696 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 GMIPQ9P107 970 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 SIRPGQ9P1W8 387 aa13.19□□□□□ -0.3
SPTLC1-201ENST00000262554 ZFP69BQ9UJL9 534 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms