RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SNCBQ16143 134 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 PTPN20Q4JDL3 420 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 ZC3H12AQ5D1E8 599 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 GLT6D1Q7Z4J2 308 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 SNX31Q8N9S9 440 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 LPCAT1Q8NF37 534 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 WWOXQ9NZC7 414 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 PHIPQ8WWQ0 1821 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 FTH1P02794 183 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 WASHC5Q12768 1159 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 KCNMB4Q86W47 210 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 ILKAPQ9H0C8 392 aaPredicted RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 CDC42EP4Q9H3Q1 356 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 SIX2Q9NPC8 291 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 WRAP73Q9P2S5 460 aaPredicted RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 HSFX1Q9UBD0 423 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 EIF3LQ9Y262 564 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 TBL1XO60907 577 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 ANP32DO95626 131 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 CCNB1P14635 433 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 KRT4P19013 534 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 DGKAP23743 735 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 LPIN1Q14693 890 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 AASDHQ4L235 1098 aaPredicted RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 TDRD5Q8NAT2 981 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 SMG7Q92540 1137 aaKnown RBP13.92□□□□□ -0.18
LDLR-201ENST00000252444 PAFAH2Q99487 392 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 NDEL1Q9GZM8 345 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 CTNNAL1Q9UBT7 734 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 ADAM21Q9UKJ8 722 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 RNF112Q9ULX5 631 aa13.92□□□□□ -0.18
LDLR-201ENST00000252444 PIRO00625 290 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 GABRR2P28476 465 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 POU4F1Q01851 419 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 LBRQ14739 615 aaKnown RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 TMEM110Q86TL2 294 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PDCD7Q8N8D1 485 aaKnown RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 MANSC1Q9H8J5 431 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PDLIM7Q9NR12 457 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PCMTD2Q9NV79 361 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 CAPN7Q9Y6W3 813 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PRNPP04156 253 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 H2AFXP16104 143 aaPredicted RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 KCNJ1P48048 391 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 SCNN1BP51168 640 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PLOD1Q02809 727 aaPredicted RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 IL10RBQ08334 325 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 IFT88Q13099 833 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 GPR17Q13304 367 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 ZIM3Q96PE6 472 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 SLC13A1Q9BZW2 595 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 TMEM189-UBE2V1I3L0A0 370 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 BMP10O95393 424 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 VNN1O95497 513 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 GABRB2P47870 512 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 VEGFBP49765 207 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 ITIH4Q14624 930 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 NOA1Q8NC60 698 aaKnown RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 MLPHQ9BV36 600 aaPredicted RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 VPS51Q9UID3 782 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 TACR2P21452 398 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 SLC29A2Q14542 456 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 PDGFRLQ15198 375 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 CACHD1Q5VU97 1274 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 AGGF1Q8N302 714 aaeCLIP13.91□□□□□ -0.18
LDLR-201ENST00000252444 ART4Q93070 314 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 OTUB1Q96FW1 271 aaPredicted RBP13.91□□□□□ -0.18
LDLR-201ENST00000252444 RAD9AQ99638 391 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 RBBP8Q99708 897 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 NCKIPSDQ9NZQ3 722 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 SLC39A10Q9ULF5 831 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 MYH4Q9Y623 1939 aa13.91□□□□□ -0.18
LDLR-201ENST00000252444 SBF2Q86WG5 1849 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 FGFR1P11362 822 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 UNGP13051 313 aaPredicted RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 HALP42357 657 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 GPR158Q5T848 1215 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 RAP1GAP2Q684P5 730 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 ELAC2Q9BQ52 826 aaKnown RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 USP15Q9Y4E8 981 aaPredicted RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 BRWD3Q6RI45 1802 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 A0A0G2JND7 137 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 RIPK2O43353 540 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 KATNA1O75449 491 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 GSCP56915 257 aaPredicted RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 PTK2BQ14289 1009 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 SPATA17Q96L03 361 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 CDH19Q9H159 772 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 CATSPERZQ9NTU4 200 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 FBXL21Q9UKT6 434 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 DOCK1Q14185 1865 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 A0A1W2PQH9 124 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 C2CD4BA6NLJ0 364 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 PROZP22891 400 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 TAF10Q12962 218 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 INSCQ1MX18 579 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 MUM1Q2TAK8 710 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 STRA8Q7Z7C7 330 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 KREMEN2Q8NCW0 462 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms