RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ZHX1-C8orf76Q96EF9 292 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FICDQ9BVA6 458 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CEP44Q9C0F1 390 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 SPRTNQ9H040 489 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ZMYM5Q9UJ78 669 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM191CA6NGB0 347 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CST8O60676 142 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ENO1P06733 434 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RPSAP08865 295 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ACTR3P61158 418 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FUT11Q495W5 492 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ATXN7L2Q5T6C5 722 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ZDHHC20Q5W0Z9 365 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 VASH1Q7L8A9 365 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 OTOP3Q7RTS5 596 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MIER2Q8N344 545 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ELMO1Q92556 727 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MTMR9Q96QG7 549 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RBM15Q96T37 977 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 AGO4Q9HCK5 861 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 GPRC5DQ9NZD1 345 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 HEBP2Q9Y5Z4 205 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ISM1B1AKI9 464 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CLDN4O14493 209 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 STX11O75558 287 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 GIMD1P0DJR0 217 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MMP13P45452 471 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MAGOHP61326 146 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MTAPQ13126 283 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CCINQ13939 588 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CBX2Q14781 532 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RBM43Q6ZSC3 357 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TRPV3Q8NET8 790 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RBM22Q9NW64 420 aaKnown RBP eCLIP6.24□□□□□ -1.411e-6■■■■■ 27.8
SCN1A-217ENST00000637988 RGS5O15539 181 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 USP1O94782 785 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PTPN9P43378 593 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PSMC6P62333 389 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MRPS22P82650 360 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 NFIL3Q16649 462 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 LONRF1Q17RB8 773 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF618Q5T7W0 954 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TTC7BQ86TV6 843 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TRPC4APQ8TEL6 797 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FAM172AQ8WUF8 416 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FAM126AQ9BYI3 521 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CCSER1Q9C0I3 900 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 EHD4Q9H223 541 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CATSPERZQ9NTU4 200 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RABGEF1Q9UJ41 708 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 AP4E1Q9UPM8 1137 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PTPRMP28827 1452 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 NEDD8-MDP1E9PL57 170 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 DDX3XO00571 662 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RGS14O43566 566 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ENTPD5O75356 428 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CYP11B1P15538 503 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 POU1F1P28069 291 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 AVPR1BP47901 424 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ACSM2AQ08AH3 577 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 VGLL4Q14135 290 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PSMD5Q16401 504 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 MPPE1Q53F39 396 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 IZUMO1Q8IYV9 350 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 EFCAB3Q8N7B9 438 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FAM98AQ8NCA5 519 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 HELQQ8TDG4 1101 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TESCQ96BS2 214 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PLEKHF1Q96S99 279 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 KIAA1683Q9H0B3 1180 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 DUS2Q9NX74 493 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 ING3Q9NXR8 418 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 KIAA1522Q9P206 1035 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 DEC1Q9P2X7 70 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PCDHGB5Q9Y5G0 923 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 AK5Q9Y6K8 562 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PIK3C2BO00750 1634 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 NEMP2A6NFY4 417 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 RNASEH2AO75792 299 aaKnown RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 KRT34O76011 436 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 UBXN7O94888 489 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 KLHL18O94889 574 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 GYS1P13807 737 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CYP11B2P19099 503 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TPP2P29144 1249 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-217ENST00000637988 PPP2R2AP63151 447 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 FOXM1Q08050 763 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 NR6A1Q15406 480 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 CNGA2Q16280 664 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 SLC30A9Q6PML9 568 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 OTOP2Q7RTS6 562 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM125Q96AQ2 219 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 OSBPL8Q9BZF1 889 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 COMMD8Q9NX08 183 aa6.24□□□□□ -1.41
SCN1A-217ENST00000637988 WASHC1A8K0Z3 465 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 WASH3PC4AMC7 463 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 CD3EAPO15446 510 aaKnown RBP6.23□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF208O43345 1280 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 UGT1A5P35504 534 aa6.23□□□□□ -1.41
SCN1A-217ENST00000637988 FOXO4P98177 505 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms