RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FARP1Q9Y4F1 1045 aaPredicted RBP20.63■□□□□ 0.89
CLN3-250ENST00000636839 XYLBO75191 536 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 GCATO75600 419 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 SLC7A9P82251 487 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ZBTB17Q13105 803 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ANKRD20A2Q5SQ80 823 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ANKRD20A1Q5TYW2 823 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ANKRD20A3Q5VUR7 823 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 TMC3Q7Z5M5 1100 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ITFG1Q8TB96 612 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 BHMTQ93088 406 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 LRRC45Q96CN5 670 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 HDAC11Q96DB2 347 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 ETNK1Q9HBU6 452 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 DOCK4Q8N1I0 1966 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 EYSQ5T1H1 3165 aa20.62■□□□□ 0.89
CLN3-250ENST00000636839 C5orf60A6NFR6 353 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 LINC01565O15544 149 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 TMEM63AO94886 807 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 C1RP00736 705 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 PTPN3P26045 913 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 UAP1Q16222 522 aaPredicted RBP20.61■□□□□ 0.89
CLN3-250ENST00000636839 Q6ZNB5 142 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 RTL10Q7L3V2 364 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 HDXQ7Z353 690 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 ZNF567Q8N184 647 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 ZSCAN18Q8TBC5 510 aaPredicted RBP20.61■□□□□ 0.89
CLN3-250ENST00000636839 PRCCQ92733 491 aaPredicted RBP20.61■□□□□ 0.89
CLN3-250ENST00000636839 HMCESQ96FZ2 354 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 TXLNGYQ9BZA5 131 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 ZDHHC7Q9NXF8 308 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 LEFTY2O00292 366 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 MAP2K7O14733 419 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 MAFKO60675 156 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 CEBPBP17676 345 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 MX2P20592 715 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 OR1E1P30953 314 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 C5orf22Q49AR2 442 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 HP1BP3Q5SSJ5 553 aaPredicted RBP20.61■□□□□ 0.89
CLN3-250ENST00000636839 BBS7Q8IWZ6 715 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 CMTM8Q8IZV2 173 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 UMODL1-AS1Q8N2C9 162 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-250ENST00000636839 NAT8LQ8N9F0 302 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 USP33Q8TEY7 942 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 SMG7Q92540 1137 aaKnown RBP20.61■□□□□ 0.89
CLN3-250ENST00000636839 AZIN2Q96A70 460 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 LMAN2LQ9H0V9 348 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 PAK5Q9P286 719 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 RAD54BQ9Y620 910 aa20.61■□□□□ 0.89
CLN3-250ENST00000636839 A0A0A0MRY4 1105 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 NCAM2O15394 837 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 BANF1O75531 89 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 PRAMEF12O95522 483 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 GLP2RO95838 553 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 ACVRL1P37023 503 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 LEKR1Q6ZMV7 388 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 ST13P5Q8NFI4 369 aaPredicted RBP20.6■□□□□ 0.89
CLN3-250ENST00000636839 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.6■□□□□ 0.895e-8■■■■■ 65.3
CLN3-250ENST00000636839 MRPL38Q96DV4 380 aaKnown RBP20.6■□□□□ 0.89
CLN3-250ENST00000636839 SPATA13Q96N96 652 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 AGAP3Q96P47 875 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 PIDD1Q9HB75 910 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 HPCAL4Q9UM19 191 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 SHROOM3Q8TF72 1996 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 A0A0D9SEW6 157 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 RASA4BC9J798 803 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 J3KR12 359 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 RASA4O43374 803 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 JCHAINP01591 159 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 ACTN2P35609 894 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 HSPA9P38646 679 aaKnown RBP20.6■□□□□ 0.89
CLN3-250ENST00000636839 CCDC13Q8IYE1 715 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 ATPAF2Q8N5M1 289 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 LZTR1Q8N653 840 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 SH3RF2Q8TEC5 729 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 USP13Q92995 863 aaPredicted RBP20.6■□□□□ 0.89
CLN3-250ENST00000636839 SEMA4AQ9H3S1 761 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 TASP1Q9H6P5 420 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 MTRF1LQ9UGC7 380 aaKnown RBP20.6■□□□□ 0.89
CLN3-250ENST00000636839 STOML2Q9UJZ1 356 aa20.6■□□□□ 0.89
CLN3-250ENST00000636839 NYNRINQ9P2P1 1898 aaKnown RBP20.59■□□□□ 0.89
CLN3-250ENST00000636839 ZBTB24O43167 697 aaPredicted RBP20.59■□□□□ 0.89
CLN3-250ENST00000636839 PPFIA2O75334 1257 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 HSD17B3P37058 310 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 TCEAL5Q5H9L2 206 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 ARHGEF18Q6ZSZ5 1173 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 PID1Q7Z2X4 250 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 PPIL6Q8IXY8 311 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 BBOF1Q8ND07 529 aa20.59■□□□□ 0.89
CLN3-250ENST00000636839 MYO18AQ92614 2054 aaKnown RBP20.59■□□□□ 0.89
CLN3-250ENST00000636839 SPTBN5Q9NRC6 3674 aaKnown RBP20.58■□□□□ 0.89
CLN3-250ENST00000636839 CD68P34810 354 aaPredicted RBP20.58■□□□□ 0.89
CLN3-250ENST00000636839 AVPR1AP37288 418 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 HYAL1Q12794 435 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 KCNJ11Q14654 390 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 MORF4L2Q15014 288 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 FNBP1LQ5T0N5 605 aa20.58■□□□□ 0.89
CLN3-250ENST00000636839 RARS2Q5T160 578 aaKnown RBP20.58■□□□□ 0.89
CLN3-250ENST00000636839 CNTD1Q8N815 330 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms