RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SKIDA1Q1XH10 827 aa15.06■□□□□ 0
CLN3-249ENST00000636685 SGSM1Q2NKQ1 1148 aa15.06■□□□□ 0
CLN3-249ENST00000636685 SETMARQ53H47 684 aaPredicted RBP15.06■□□□□ 0
CLN3-249ENST00000636685 ZNF542PQ5EBM4 170 aa15.06■□□□□ 0
CLN3-249ENST00000636685 TRIM69Q86WT6 500 aa15.06■□□□□ 0
CLN3-249ENST00000636685 KDM1BQ8NB78 822 aa15.06■□□□□ 0
CLN3-249ENST00000636685 KLK6Q92876 244 aa15.06■□□□□ 0
CLN3-249ENST00000636685 PTPRN2Q92932 1015 aa15.06■□□□□ 0
CLN3-249ENST00000636685 CALN1Q9BXU9 219 aa15.06■□□□□ 0
CLN3-249ENST00000636685 SLC25A18Q9H1K4 315 aa15.06■□□□□ 0
CLN3-249ENST00000636685 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.05■□□□□ -0
CLN3-249ENST00000636685 SLC31A1O15431 190 aa15.05■□□□□ -0
CLN3-249ENST00000636685 MSI1O43347 362 aaKnown RBP15.05■□□□□ -0
CLN3-249ENST00000636685 LATS1O95835 1130 aa15.05■□□□□ -0
CLN3-249ENST00000636685 ITGA2BP08514 1039 aa15.05■□□□□ -0
CLN3-249ENST00000636685 VAV1P15498 845 aa15.05■□□□□ -0
CLN3-249ENST00000636685 PRLRP16471 622 aa15.05■□□□□ -0
CLN3-249ENST00000636685 SLC5A2P31639 672 aa15.05■□□□□ -0
CLN3-249ENST00000636685 AFMP43652 599 aa15.05■□□□□ -0
CLN3-249ENST00000636685 AP3M2P53677 418 aa15.05■□□□□ -0
CLN3-249ENST00000636685 FOXK1P85037 733 aa15.05■□□□□ -0
CLN3-249ENST00000636685 INCA1Q0VD86 236 aa15.05■□□□□ -0
CLN3-249ENST00000636685 ZNF177Q13360 481 aaPredicted RBP15.05■□□□□ -0
CLN3-249ENST00000636685 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
CLN3-249ENST00000636685 DRAP1Q14919 205 aaPredicted RBP15.05■□□□□ -0
CLN3-249ENST00000636685 KMT5BQ4FZB7 885 aa15.05■□□□□ -0
CLN3-249ENST00000636685 MPP7Q5T2T1 576 aa15.05■□□□□ -0
CLN3-249ENST00000636685 CCDC73Q6ZRK6 1079 aa15.05■□□□□ -0
CLN3-249ENST00000636685 BHLHA9Q7RTU4 235 aa15.05■□□□□ -0
CLN3-249ENST00000636685 TMEM145Q8NBT3 493 aa15.05■□□□□ -0
CLN3-249ENST00000636685 OR13H1Q8NG92 308 aa15.05■□□□□ -0
CLN3-249ENST00000636685 FIBINQ8TAL6 211 aa15.05■□□□□ -0
CLN3-249ENST00000636685 PARD3BQ8TEW8 1205 aa15.05■□□□□ -0
CLN3-249ENST00000636685 EDEM1Q92611 657 aa15.05■□□□□ -0
CLN3-249ENST00000636685 FAM131CQ96AQ9 280 aa15.05■□□□□ -0
CLN3-249ENST00000636685 RPL10LQ96L21 214 aaKnown RBP15.05■□□□□ -0
CLN3-249ENST00000636685 KDM4CQ9H3R0 1056 aa15.05■□□□□ -0
CLN3-249ENST00000636685 FZD3Q9NPG1 666 aa15.05■□□□□ -0
CLN3-249ENST00000636685 FBXO2Q9UK22 296 aaPredicted RBP15.05■□□□□ -0
CLN3-249ENST00000636685 ITIH6Q6UXX5 1313 aa15.05■□□□□ -0
CLN3-249ENST00000636685 SCN8AQ9UQD0 1980 aa15.05■□□□□ -0
CLN3-249ENST00000636685 CCDC187A0A096LP49 1063 aa15.04■□□□□ -0
CLN3-249ENST00000636685 NEMP2A6NFY4 417 aa15.04■□□□□ -0
CLN3-249ENST00000636685 EXOC3O60645 756 aa15.04■□□□□ -0
CLN3-249ENST00000636685 ASS1P00966 412 aaKnown RBP15.04■□□□□ -0
CLN3-249ENST00000636685 NEFLP07196 543 aa15.04■□□□□ -0
CLN3-249ENST00000636685 SRPRAP08240 638 aaKnown RBP15.04■□□□□ -0
CLN3-249ENST00000636685 CD58P19256 250 aa15.04■□□□□ -0
CLN3-249ENST00000636685 TXLNAP40222 546 aa15.04■□□□□ -0
CLN3-249ENST00000636685 STK19P49842 368 aaPredicted RBP15.04■□□□□ -0
CLN3-249ENST00000636685 PDX1P52945 283 aa15.04■□□□□ -0
CLN3-249ENST00000636685 CYP4F2P78329 520 aa15.04■□□□□ -0
CLN3-249ENST00000636685 CLDN10P78369 228 aa15.04■□□□□ -0
CLN3-249ENST00000636685 CNTN1Q12860 1018 aa15.04■□□□□ -0
CLN3-249ENST00000636685 FAM133BQ5BKY9 247 aaKnown RBP15.04■□□□□ -0
CLN3-249ENST00000636685 FSCBQ5H9T9 825 aa15.04■□□□□ -0
CLN3-249ENST00000636685 PITRM1Q5JRX3 1037 aa15.04■□□□□ -0
CLN3-249ENST00000636685 RAB41Q5JT25 222 aa15.04■□□□□ -0
CLN3-249ENST00000636685 PERM1Q5SV97 790 aa15.04■□□□□ -0
CLN3-249ENST00000636685 C14orf80Q86SX3 495 aa15.04■□□□□ -0
CLN3-249ENST00000636685 PIGZQ86VD9 579 aa15.04■□□□□ -0
CLN3-249ENST00000636685 JAMLQ86YT9 394 aa15.04■□□□□ -0
CLN3-249ENST00000636685 CARNMT1Q8N4J0 409 aa15.04■□□□□ -0
CLN3-249ENST00000636685 FAM26EQ8N5C1 309 aa15.04■□□□□ -0
CLN3-249ENST00000636685 MYEOVQ96EZ4 313 aa15.04■□□□□ -0
CLN3-249ENST00000636685 NOX5Q96PH1 765 aa15.04■□□□□ -0
CLN3-249ENST00000636685 DUSP23Q9BVJ7 150 aa15.04■□□□□ -0
CLN3-249ENST00000636685 ULBP1Q9BZM6 244 aa15.04■□□□□ -0
CLN3-249ENST00000636685 OLA1Q9NTK5 396 aaKnown RBP15.04■□□□□ -0
CLN3-249ENST00000636685 GEMIN8Q9NWZ8 242 aaKnown RBP15.04■□□□□ -0
CLN3-249ENST00000636685 DNAJC28Q9NX36 388 aa15.04■□□□□ -0
CLN3-249ENST00000636685 SARDHQ9UL12 918 aa15.04■□□□□ -0
CLN3-249ENST00000636685 CLIC4Q9Y696 253 aa15.04■□□□□ -0
CLN3-249ENST00000636685 SLC7A4O43246 635 aa15.03■□□□□ -0
CLN3-249ENST00000636685 TCEA3O75764 348 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ZBED1O96006 694 aa15.03■□□□□ -0
CLN3-249ENST00000636685 RPN1P04843 607 aaKnown RBP15.03■□□□□ -0
CLN3-249ENST00000636685 GJB2P29033 226 aa15.03■□□□□ -0
CLN3-249ENST00000636685 NUMBP49757 651 aa15.03■□□□□ -0
CLN3-249ENST00000636685 TKTL1P51854 596 aa15.03■□□□□ -0
CLN3-249ENST00000636685 RPS24P62847 133 aaKnown RBP15.03■□□□□ -0
CLN3-249ENST00000636685 DLG4P78352 724 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ECT2LQ008S8 904 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ELAVL3Q14576 367 aaKnown RBP15.03■□□□□ -0
CLN3-249ENST00000636685 AGBL4Q5VU57 503 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ZCCHC8Q6NZY4 707 aaKnown RBP15.03■□□□□ -0
CLN3-249ENST00000636685 VASH2Q86V25 355 aa15.03■□□□□ -0
CLN3-249ENST00000636685 SLC22A18ASQ8N1D0 253 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ZNF557Q8N988 423 aaPredicted RBP15.03■□□□□ -0
CLN3-249ENST00000636685 TPCN2Q8NHX9 752 aa15.03■□□□□ -0
CLN3-249ENST00000636685 ZNF564Q8TBZ8 553 aaPredicted RBP15.03■□□□□ -0
CLN3-249ENST00000636685 RNF139Q8WU17 664 aa15.03■□□□□ -0
CLN3-249ENST00000636685 HTR3CQ8WXA8 447 aa15.03■□□□□ -0
CLN3-249ENST00000636685 TAF4BQ92750 862 aa15.03■□□□□ -0
CLN3-249ENST00000636685 PRICKLE1Q96MT3 831 aaPredicted RBP15.03■□□□□ -0
CLN3-249ENST00000636685 CEP83Q9Y592 693 aa15.03■□□□□ -0
CLN3-249ENST00000636685 PCDHGA4Q9Y5G9 962 aa15.03■□□□□ -0
CLN3-249ENST00000636685 LRRK1Q38SD2 2015 aa15.02■□□□□ -0
CLN3-249ENST00000636685 TRPM6Q9BX84 2022 aa15.02■□□□□ -0
CLN3-249ENST00000636685 EME2A4GXA9 379 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms