RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 RBM22Q9NW64 420 aaKnown RBP eCLIP5.65□□□□□ -1.51e-6■■■■■ 27.8
SCN1A-209ENST00000635750 CMTM6Q9NX76 183 aa5.65□□□□□ -1.5
SCN1A-209ENST00000635750 OPTCQ9UBM4 332 aa5.65□□□□□ -1.5
SCN1A-209ENST00000635750 MRPS23Q9Y3D9 190 aaKnown RBP5.65□□□□□ -1.5
SCN1A-209ENST00000635750 A0A1W2PRG6 482 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 UBE2Q2LH0YL09 131 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 GATBO75879 557 aaKnown RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 EPORP19235 508 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CASP1P29466 404 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 PTPN9P43378 593 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 JAMLQ86YT9 394 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 TBC1D10CQ8IV04 446 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SYTL5Q8TDW5 730 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SGCDQ92629 289 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 IL17RAQ96F46 866 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 C9orf72Q96LT7 481 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FERD3LQ96RJ6 166 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 TMEM120AQ9BXJ8 343 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 MTMR12Q9C0I1 747 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ELOVL4Q9GZR5 314 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 C3orf14Q9HBI5 128 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 VPS45Q9NRW7 570 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CLN6Q9NWW5 311 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 NYAP2Q9P242 653 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 A0A0B4J269 797 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 E7ENQ6 273 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 RASGRP1O95267 797 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CYP17A1P05093 508 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ICAM1P05362 532 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 KELP23276 732 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 S100A1P23297 94 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 MYL9P24844 172 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 AXLP30530 894 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 NOS2P35228 1153 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 TKTL1P51854 596 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CHN2P52757 468 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 PRKAG1P54619 331 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 MPP3Q13368 585 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 TUBB3Q13509 450 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CSHL1Q14406 222 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 NR1D2Q14995 579 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FAM187BQ17R55 369 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 XKR4Q5GH76 650 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 GRTP1Q5TC63 336 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FBXO38Q6PIJ6 1188 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 PARGQ86W56 976 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 GPSM1Q86YR5 675 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SYT12Q8IV01 421 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 MAGEE2Q8TD90 523 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 NSMCE2Q96MF7 247 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 RUSC1Q9BVN2 902 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ZNF518BQ9C0D4 1074 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 KLHL4Q9C0H6 718 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 BHLHE41Q9C0J9 482 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CYP3A43Q9HB55 503 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 XPNPEP3Q9NQH7 507 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 NDUFA13Q9P0J0 144 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ZMYM5Q9UJ78 669 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CHKBQ9Y259 395 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ACOT9Q9Y305 439 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 RFX7Q2KHR2 1363 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 KIF1CO43896 1103 aaKnown RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 KCNH1O95259 989 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ADH1CP00326 375 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FTH1P02794 183 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 DNTTP04053 509 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 CCNYL3P0C7X3 344 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 COMTP21964 271 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ALDH3A2P51648 485 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ARFIP1P53367 373 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 GMFBP60983 142 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 TRAF3Q13114 568 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ELOAQ14241 798 aaKnown RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 ZDHHC17Q8IUH5 632 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 LZTR1Q8N653 840 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SAMD3Q8N6K7 520 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SLC16A10Q8TF71 515 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FAM172AQ8WUF8 416 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 RORBQ92753 470 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 LENG9Q96B70 501 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 HIST1H2AAQ96QV6 131 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 C2orf49Q9BVC5 232 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 FAM192AQ9GZU8 254 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 REEP1Q9H902 201 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 KCNH7Q9NS40 1196 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SCAF8Q9UPN6 1271 aaKnown RBP5.65□□□□□ -1.51
SCN1A-209ENST00000635750 INVSQ9Y283 1065 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SPEF1Q9Y4P9 236 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 SNCAIPQ9Y6H5 919 aa5.65□□□□□ -1.51
SCN1A-209ENST00000635750 USP6P35125 1406 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 A0A1W2PQ72 361 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 FCHO1O14526 889 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 EIF3HO15372 352 aaKnown RBP eCLIP5.64□□□□□ -1.516e-7■■■■□ 20.9
SCN1A-209ENST00000635750 TCF4P15884 667 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 KCNA5P22460 613 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 LTKP29376 864 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 SERPINA13PQ6UXR4 307 aa5.64□□□□□ -1.51
SCN1A-209ENST00000635750 CXXC5Q7LFL8 322 aaKnown RBP5.64□□□□□ -1.51
SCN1A-209ENST00000635750 GAL3ST3Q96A11 431 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms