RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 EIF2B5Q13144 721 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 DGCR6Q14129 220 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ZNF284Q2VY69 593 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ZNF544Q6NX49 715 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 PRR23BQ6ZRT6 265 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 FBXO33Q7Z6M2 555 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 AMIGO2Q86SJ2 522 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ADPRHL2Q9NX46 363 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 GGA3Q9NZ52 723 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 COL15A1P39059 1388 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MGAT1P26572 445 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MARSP56192 900 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 PPP4CP60510 307 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TTLL4Q14679 1199 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TKFCQ3LXA3 575 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TYW3Q6IPR3 259 aaKnown RBP9.07□□□□□ -0.96
VCL-206ENST00000623461 NEK10Q6ZWH5 1172 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 AHI1Q8N157 1196 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 MCFD2Q8NI22 146 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ETNK2Q9NVF9 386 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 KIF1AQ12756 1690 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 CCNE2O96020 404 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 F9P00740 461 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 PRKAR1AP10644 381 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 C2CD6Q53TS8 623 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 BICRALQ6AI39 1079 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 TUBA3EQ6PEY2 450 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 KIAA0408Q6ZU52 694 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 HM13Q8TCT9 377 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 AFG1LQ8WV93 481 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 KAZALD1Q96I82 304 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 ZNF570Q96NI8 536 aa9.07□□□□□ -0.96
VCL-206ENST00000623461 DDX3YO15523 660 aaKnown RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 GUCY1B2O75343 617 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 LBPP18428 481 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 ENPEPQ07075 957 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 METTL21CQ5VZV1 264 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 GALNT18Q6P9A2 607 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 SV2AQ7L0J3 742 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 IRF2BP2Q7Z5L9 587 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 TMEM110Q86TL2 294 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 ZDHHC17Q8IUH5 632 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 RXFP2Q8WXD0 754 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 AP3S1Q92572 193 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 FAM49AQ9H0Q0 323 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 PRMT7Q9NVM4 692 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 ZNF624Q9P2J8 865 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 MYH6P13533 1939 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 CCDC162PA2VCL2 907 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 TSPAN19P0C672 248 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PGS1Q32NB8 556 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 C5orf22Q49AR2 442 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 RNF219Q5W0B1 726 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 C16orf46Q6P387 395 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 C11orf88Q6PI97 169 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 CRTC3Q6UUV7 619 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 RAB43Q86YS6 212 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 FAM126BQ8IXS8 530 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 DEPDC4Q8N2C3 294 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 HTR3CQ8WXA8 447 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 RCN3Q96D15 328 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PABPC5Q96DU9 382 aaKnown RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 TEKT5Q96M29 485 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 HOPXQ9BPY8 73 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 PIF1Q9H611 641 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PRELID1Q9Y255 219 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 C2orf81A6NN90 581 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 RGS20O76081 388 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 BPGMP07738 259 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 GLRA2P23416 452 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 POU1F1P28069 291 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 SLC12A3P55017 1021 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 C6orf89Q6UWU4 347 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 WDR36Q8NI36 951 aaKnown RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 TSEN34Q9BSV6 310 aaKnown RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 RIOX1Q9H6W3 641 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 REEP1Q9H902 201 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 LEF1Q9UJU2 399 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 OGTO15294 1046 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 KCNH1O95259 989 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PSMA3P25788 255 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PNPLA4P41247 253 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 NAMPTP43490 491 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PLIN5Q00G26 463 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 USP4Q13107 963 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 NR6A1Q15406 480 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 TWF2Q6IBS0 349 aaKnown RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 ZNF540Q8NDQ6 660 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 SH3KBP1Q96B97 665 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 MLPHQ9BV36 600 aaPredicted RBP9.06□□□□□ -0.96
VCL-206ENST00000623461 EBF3Q9H4W6 596 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 SLAIN2Q9P270 581 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 NARFQ9UHQ1 456 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 GMPPBQ9Y5P6 360 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PTPRMP28827 1452 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 LOC100506127A0A0U1RQW1 187 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 EPHB6O15197 1021 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 PEX11AO75192 247 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 OLR1P78380 273 aa9.06□□□□□ -0.96
VCL-206ENST00000623461 HIST2H2ACQ16777 129 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms