RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ENPP2Q13822 863 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 MESDQ14696 234 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CRY1Q16526 586 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 PTPRNQ16849 979 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 SMTNL2Q2TAL5 461 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 EOGTQ5NDL2 527 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 TSSK4Q6SA08 328 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CYB5D2Q8WUJ1 264 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 GABRG3Q99928 467 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 FEM1AQ9BSK4 669 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 CACNA2D2Q9NY47 1150 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 SLC8A2Q9UPR5 921 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 OR51B4Q9Y5P0 310 aa17.01■□□□□ 0.31
CCDC28A-202ENST00000611852 A0A0A6YYK5 440 aaPredicted RBP17■□□□□ 0.31
CCDC28A-202ENST00000611852 WASH3PC4AMC7 463 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 RHOCP08134 193 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 RARAP10276 462 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 EPHB2P29323 1055 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 HTR7P34969 479 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 WASP42768 502 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 HADHBP55084 474 aaKnown RBP17■□□□□ 0.31
CCDC28A-202ENST00000611852 CSTF1Q05048 431 aaKnown RBP17■□□□□ 0.31
CCDC28A-202ENST00000611852 ZNF234Q14588 700 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 E2F5Q15329 346 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 DPYSL2Q16555 572 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 C6orf118Q5T5N4 469 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 RNF219Q5W0B1 726 aaPredicted RBP17■□□□□ 0.31
CCDC28A-202ENST00000611852 TMEM92Q6UXU6 159 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 TEKT4Q8WW24 435 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 KCTD15Q96SI1 283 aaPredicted RBP17■□□□□ 0.31
CCDC28A-202ENST00000611852 NDFIP2Q9NV92 336 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 TMEM248Q9NWD8 314 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 PLA2G4CQ9UP65 541 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 STON1Q9Y6Q2 735 aa17■□□□□ 0.31
CCDC28A-202ENST00000611852 MUC22E2RYF6 1773 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 ILVBLA1L0T0 632 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 TMEM110-MUSTN1A8MSY1 372 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 H0Y858 1186 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 ASLP04424 464 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 SP9P0CG40 484 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 IL12RB1P42701 662 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 SSR1P43307 286 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 MAPKAPK2P49137 400 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 NUMBP49757 651 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 TAS2R40P59535 323 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 TPI1P60174 286 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 KRT83P78385 493 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 HADHQ16836 314 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 ZNF528Q3MIS6 628 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 PPP6R3Q5H9R7 873 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 SDE2Q6IQ49 451 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 LRRC8AQ8IWT6 810 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 CCDC112Q8NEF3 446 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 HSPH1Q92598 858 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 DESI2Q9BSY9 194 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 MUC3BQ9H195 1237 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 VPS28Q9UK41 221 aa16.99■□□□□ 0.31
CCDC28A-202ENST00000611852 A0A0D9SEW6 157 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 EEF2KO00418 725 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 COL9A1P20849 921 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 HOXA6P31267 233 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 CTSOP43234 321 aaPredicted RBP16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 NOP2P46087 812 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 DGKEP52429 567 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 VAV2P52735 878 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 ZNF783Q6ZMS7 281 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 CAMKK1Q8N5S9 505 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 RTL3Q8N8U3 475 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 MYO19Q96H55 970 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 MRGPRX3Q96LB0 322 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 HHIPQ96QV1 700 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 LACRTQ9GZZ8 138 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 TMEM245Q9H330 911 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 CATSPERBQ9H7T0 1116 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 DNAI1Q9UI46 699 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 SALL4Q9UJQ4 1053 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 ERVW-1Q9UQF0 538 aa16.98■□□□□ 0.31
CCDC28A-202ENST00000611852 A0A1W2PQF6 199 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 WASH4PA8MWX3 477 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 FGF10O15520 208 aaPredicted RBP16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 PJA2O43164 708 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 HOXB2P14652 356 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 GOT1P17174 413 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 HCAR3P49019 387 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 ZNF135P52742 658 aaPredicted RBP16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 ECT2LQ008S8 904 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 GNA12Q03113 381 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 SULT2A1Q06520 285 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 ATP13A4Q4VNC1 1196 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 FNDC3BQ53EP0 1204 aaKnown RBP16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 SERPINA13PQ6UXR4 307 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 RFX8Q6ZV50 586 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 TSTD1Q8NFU3 115 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 OR7D4Q8NG98 312 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 NELL1Q92832 810 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 PSMB7Q99436 277 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 CD248Q9HCU0 757 aa16.97■□□□□ 0.31
CCDC28A-202ENST00000611852 CWC15Q9P013 229 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms