RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 UBE2OQ9C0C9 1292 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-216ENST00000598201 CWH43Q9H720 699 aa17.46■□□□□ 0.39
SHKBP1-216ENST00000598201 MPP6Q9NZW5 540 aa17.46■□□□□ 0.39
SHKBP1-216ENST00000598201 PCDHA11Q9Y5I1 949 aa17.46■□□□□ 0.39
SHKBP1-216ENST00000598201 MICAL3Q7RTP6 2002 aa17.46■□□□□ 0.38
SHKBP1-216ENST00000598201 SHROOM3Q8TF72 1996 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 E9PAM4 449 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 GOLGA8RI6L899 631 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 DFFAO00273 331 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 USP12O75317 370 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 ASMTLO95671 621 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 JCHAINP01591 159 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 INHBAP08476 426 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 GSTA2P09210 222 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 MLLT6P55198 1093 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 TBX4P57082 545 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SF3A3Q12874 501 aaKnown RBP eCLIP17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC1A5Q15758 541 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 UNC5BQ8IZJ1 945 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 GIPC2Q8TF65 315 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SGSM3Q96HU1 749 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 MLPHQ9BV36 600 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC39A8Q9C0K1 460 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 GBA3Q9H227 469 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 GRID1Q9ULK0 1009 aa17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SMG5Q9UPR3 1016 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-216ENST00000598201 SDR42E2A6NKP2 422 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 ZBBXA8MT70 800 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 MTSS1O43312 755 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 RTN3O95197 1032 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CSH1P0DML2 217 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CSH2P0DML3 217 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 ATF6P18850 670 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 NFKB1P19838 968 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CA4P22748 312 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 FOXN2P32314 431 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 ALDH7A1P49419 539 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC18A1P54219 525 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CASC4Q6P4E1 433 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 TMCO2Q7Z6W1 182 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC26A11Q86WA9 606 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 LRRC6Q86X45 466 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CNTD1Q8N815 330 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 FBXO22Q8NEZ5 403 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 HERVK_113Q902F9 699 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 ZNF419Q96HQ0 510 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 SERAC1Q96JX3 654 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 SPATA17Q96L03 361 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 TEKT5Q96M29 485 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 SYBUQ9NX95 663 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 IKBKGQ9Y6K9 419 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 FAM169AQ9Y6X4 670 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 FAM159BA6NKW6 160 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 FGF10O15520 208 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 ZNF189O75820 626 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 AP2A1O95782 977 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 STEAP4Q687X5 459 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 KCTD11Q693B1 232 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 MIB1Q86YT6 1006 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 OR52K1Q8NGK4 314 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 USP33Q8TEY7 942 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 OXNAD1Q96HP4 312 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 PAIP2Q9BPZ3 127 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CATSPERBQ9H7T0 1116 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CLIC5Q9NZA1 410 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 MOCS1Q9NZB8 636 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 CXXC1Q9P0U4 656 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 TRHDEQ9UKU6 1024 aa17.44■□□□□ 0.38
SHKBP1-216ENST00000598201 IQANK1A0A1B0GTG1 560 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 HTR7P34969 479 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 WDR5P61964 334 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 NRG1Q02297 640 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SHHQ15465 462 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 PSMD5Q16401 504 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 C9orf50Q5SZB4 431 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 GKAP1Q5VSY0 366 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 C6orf89Q6UWU4 347 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SH2D5Q6ZV89 423 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 PIGWQ7Z7B1 504 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SRLQ86TD4 932 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 ZNF683Q8IZ20 524 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 C1orf74Q96LT6 269 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 TSGA13Q96PP4 275 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 C12orf65Q9H3J6 166 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SSU72Q9NP77 194 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 TLR8Q9NR97 1041 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 FGFR1OP2Q9NVK5 253 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 VANGL2Q9ULK5 521 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 RRP15Q9Y3B9 282 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 COL4A6Q14031 1691 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 GREB1Q4ZG55 1949 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MAFKO60675 156 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SUN1O94901 812 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MT-ND3P03897 115 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SMARCB1Q12824 385 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 MS4A13Q5J8X5 152 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 C10orf120Q5SQS8 335 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 AFMIDQ63HM1 303 aa17.43■□□□□ 0.38
SHKBP1-216ENST00000598201 SLC8B1Q6J4K2 584 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms