RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 AASDHPPTQ9NRN7 309 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 CNTN6Q9UQ52 1028 aa12.94□□□□□ -0.34
TRIM28-212ENST00000597995 PLXNA2O75051 1894 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 EIF4E1BA6NMX2 242 aaKnown RBP12.93□□□□□ -0.34
TRIM28-212ENST00000597995 TTC34A8MYJ7 566 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 LATO43561 262 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 RFPL3O75679 317 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 ADH1BP00325 375 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 RXRGP48443 463 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 ARRB1P49407 418 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-212ENST00000597995 APBA1Q02410 837 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 GCNT1Q02742 428 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 CETN1Q12798 172 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 SLC12A1Q13621 1099 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 PRAMEF14Q5SWL7 426 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 C6orf118Q5T5N4 469 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 GJB7Q6PEY0 223 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 CFAP52Q8N1V2 620 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 OXR1Q8N573 874 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 TSC1Q92574 1164 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 PTPRN2Q92932 1015 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 MIS12Q9H081 205 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 NUCKS1Q9H1E3 243 aaKnown RBP12.93□□□□□ -0.34
TRIM28-212ENST00000597995 KDM4CQ9H3R0 1056 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 LMBRD1Q9NUN5 540 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 SLCO3A1Q9UIG8 710 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 NAALADL1Q9UQQ1 740 aa12.93□□□□□ -0.34
TRIM28-212ENST00000597995 TLR4O00206 839 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 PLK4O00444 970 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 SLC9A1P19634 815 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 EPHA8P29322 1005 aaPredicted RBP12.92□□□□□ -0.34
TRIM28-212ENST00000597995 NUDT1P36639 197 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 NNMTP40261 264 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 CTSOP43234 321 aaPredicted RBP12.92□□□□□ -0.34
TRIM28-212ENST00000597995 GPD2P43304 727 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ABCG1P45844 678 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ACADSBP45954 432 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ACADVLP49748 655 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ADPRHP54922 357 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 NXPH1P58417 271 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 SULT2A1Q06520 285 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ILKQ13418 452 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ELAVL3Q14576 367 aaKnown RBP12.92□□□□□ -0.34
TRIM28-212ENST00000597995 DPCR1Q3MIW9 517 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 RNF219Q5W0B1 726 aaPredicted RBP12.92□□□□□ -0.34
TRIM28-212ENST00000597995 MMS22LQ6ZRQ5 1243 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 LGI2Q8N0V4 545 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 CACTIN-AS1Q8N1I8 211 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 STK40Q8N2I9 435 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 AADATQ8N5Z0 425 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 MFSD2AQ8NA29 543 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 MLKLQ8NB16 471 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 OR14C36Q8NHC7 312 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 STK32AQ8WU08 396 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 FAM131CQ96AQ9 280 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 FAM149B1Q96BN6 582 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 SERAC1Q96JX3 654 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 CRACR2AQ9BSW2 395 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 NRSN2Q9GZP1 204 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 ACP6Q9NPH0 428 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 TJP2Q9UDY2 1190 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 CEP83Q9Y592 693 aa12.92□□□□□ -0.34
TRIM28-212ENST00000597995 TP53BP1Q12888 1972 aaPredicted RBP12.92□□□□□ -0.34
TRIM28-212ENST00000597995 SMG1Q96Q15 3661 aaKnown RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 ARID1BQ8NFD5 2236 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 WNT9AO14904 365 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 SLC7A4O43246 635 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 MAGEC1O60732 1142 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 FGFR1OPO95684 399 aaKnown RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 APOEP02649 317 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 TACR2P21452 398 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 MZF1P28698 734 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 ANP32AP39687 249 aaKnown RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 PSMD8P48556 350 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 VASPP50552 380 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 PLK1P53350 603 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 OXCT1P55809 520 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 OVGP1Q12889 678 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 DNAJC3Q13217 504 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 RTP5Q14D33 572 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 MEA1Q16626 185 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 NAPEPLDQ6IQ20 393 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 FBXL19Q6PCT2 694 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 PRPF39Q86UA1 669 aaKnown RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 TAC4Q86UU9 113 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 IQCHQ86VS3 1027 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 APCDD1Q8J025 514 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 EID2Q8N6I1 236 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 BTN2A3PQ96KV6 586 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 UBL7Q96S82 380 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 UBE2TQ9NPD8 197 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 AJAP1Q9UKB5 411 aaPredicted RBP12.91□□□□□ -0.34
TRIM28-212ENST00000597995 DMTF1Q9Y222 760 aa12.91□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3DA0A087WVF3 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3IA0A087WXS9 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3EA0A087X179 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3KA0A087X1G2 549 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3FA6NER0 549 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-212ENST00000597995 BECN2A8MW95 431 aa12.9□□□□□ -0.34
TRIM28-212ENST00000597995 TBC1D3LB9A6J9 549 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms