RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 CALCAP01258 141 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 VDRP11473 427 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 HNF1BP35680 557 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 RXRGP48443 463 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 PMS1P54277 932 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 TBX4P57082 545 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 NUGGCQ68CJ6 796 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 LCLAT1Q6UWP7 414 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 CFAP52Q8N1V2 620 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 STK40Q8N2I9 435 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 CARNMT1Q8N4J0 409 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 KDM1BQ8NB78 822 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 PTPRN2Q92932 1015 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 SKA1Q96BD8 255 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 SERAC1Q96JX3 654 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 FCRL2Q96LA5 508 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 NRSN2Q9GZP1 204 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 NUCKS1Q9H1E3 243 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 ARHGAP20Q9P2F6 1191 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 FZD4Q9ULV1 537 aa17.03■□□□□ 0.32
SHKBP1-215ENST00000597649 TARSL2A2RTX5 802 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 RNF225M0QZC1 329 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 ASLP04424 464 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 SETSIPP0DME0 302 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 CDK4P11802 303 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 GOT1P17174 413 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 PSMD8P48556 350 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 METAP1P53582 386 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 ADPRHP54922 357 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 PPP2CBP62714 309 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 PPP2CAP67775 309 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 LRMPQ12912 555 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 DCAF6Q58WW2 860 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 PITRM1Q5JRX3 1037 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 SFMBT2Q5VUG0 894 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 TTI2Q6NXR4 508 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 PCSK4Q6UW60 755 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 LRRC69Q6ZNQ3 347 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 APCDD1Q8J025 514 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 HJURPQ8NCD3 748 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 OR14C36Q8NHC7 312 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 IRGQQ8WZA9 623 aa17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 RPL10LQ96L21 214 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 XPO7Q9UIA9 1087 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-215ENST00000597649 STX10O60499 249 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 LTFP02788 710 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 EPB41P11171 864 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 VAV1P15498 845 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 DRD3P35462 400 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 NUMBP49757 651 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 ANO6Q4KMQ2 910 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 MS4A13Q5J8X5 152 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 FOXR2Q6PJQ5 311 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 ZNF843Q8N446 348 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 SNIP1Q8TAD8 396 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 FGF11Q92914 225 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 SLC39A13Q96H72 371 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 CEP63Q96MT8 703 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 FCRL3Q96P31 734 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 SRRTQ9BXP5 876 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 ERVMER34-1Q9H9K5 563 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 KIAA1257Q9ULG3 409 aa17.01■□□□□ 0.31
SHKBP1-215ENST00000597649 ITIH6Q6UXX5 1313 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 MYLKQ15746 1914 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 EDDM13A0A1B0GTR0 161 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 YKT6O15498 198 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 RRP8O43159 456 aaKnown RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 LATO43561 262 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 BRINP1O60477 761 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 SRPRAP08240 638 aaKnown RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 PLA2G2AP14555 144 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 CKMT2P17540 419 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 ARRB1P49407 418 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 STK19P49842 368 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 ECT2LQ008S8 904 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 INSM1Q01101 510 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 SFSWAPQ12872 951 aaKnown RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 CCDC40Q4G0X9 1142 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 C11orf57Q6ZUT1 292 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 SND1Q7KZF4 910 aaKnown RBP eCLIP17■□□□□ 0.31
SHKBP1-215ENST00000597649 CREBRFQ8IUR6 639 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 ZNF557Q8N988 423 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 DQX1Q8TE96 717 aaKnown RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 NAALADL1Q9UQQ1 740 aa17■□□□□ 0.31
SHKBP1-215ENST00000597649 TP53BP1Q12888 1972 aaPredicted RBP17■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3DA0A087WVF3 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3IA0A087WXS9 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3EA0A087X179 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3KA0A087X1G2 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3FA6NER0 549 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3LB9A6J9 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TRIM38O00635 465 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 SLC16A3O15427 465 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 LUC7L3O95232 432 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TBC1D3HP0C7X1 549 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 C5AR1P21730 350 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 MZF1P28698 734 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 TLE3Q04726 772 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 CDH18Q13634 790 aa16.99■□□□□ 0.31
SHKBP1-215ENST00000597649 CNGA2Q16280 664 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms