RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CCL26Q9Y258 94 aa15.64■□□□□ 0.09
TRIM28-209ENST00000597423 ILVBLA1L0T0 632 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 SOX1O00570 391 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 TRDMT1O14717 391 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 RHOCP08134 193 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 ITIH2P19823 946 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 RBL1P28749 1068 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 GBP2P32456 591 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 IFNAR2P48551 515 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 RPS24P62847 133 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 PPIDQ08752 370 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 USP4Q13107 963 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 CALCOCO2Q13137 446 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 CUL1Q13616 776 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 PRKD1Q15139 912 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 ANO4Q32M45 955 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 P3H1Q32P28 736 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 OTOP3Q7RTS5 596 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 PCGF5Q86SE9 256 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 ZNF354CQ86Y25 554 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 CCDC13Q8IYE1 715 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 EIF1ADQ8N9N8 165 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 BPIFB1Q8TDL5 484 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 CELF6Q96J87 481 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 MSLNLQ96KJ4 702 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 FAM129AQ9BZQ8 928 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 KLC2Q9H0B6 622 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 USP29Q9HBJ7 922 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 ARGLU1Q9NWB6 273 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 DUS2Q9NX74 493 aaKnown RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 PAK5Q9P286 719 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 TRHDEQ9UKU6 1024 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 TBC1D30Q9Y2I9 924 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 MFHAS1Q9Y4C4 1052 aa15.63■□□□□ 0.09
TRIM28-209ENST00000597423 TNRC18O15417 2968 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-209ENST00000597423 LAMA2P24043 3122 aaKnown RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 C5orf60A6NFR6 353 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 RASA4BC9J798 803 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 GFRA2O00451 464 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 RASA4O43374 803 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 TBX10O75333 385 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 GCATO75600 419 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 NEBLO76041 1014 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 LUC7L3O95232 432 aaKnown RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 MAP3K6O95382 1288 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 PRAMEF12O95522 483 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 LTBRP36941 435 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 PAPOLAP51003 745 aaKnown RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 GNA12Q03113 381 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 CAV1Q03135 178 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 CDH18Q13634 790 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 PDGFRLQ15198 375 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 ELF2Q15723 593 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 ARTNQ5T4W7 220 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 TMCO4Q5TGY1 634 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 WDR93Q6P2C0 686 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 YAF2Q8IY57 180 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 CARNMT1Q8N4J0 409 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 NPWQ8N729 165 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 OSCP1Q8WVF1 389 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 IFT81Q8WYA0 676 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 IRF7Q92985 503 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 FATE1Q969F0 183 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 RTP4Q96DX8 246 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 LRCH3Q96II8 777 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 PRICKLE1Q96MT3 831 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 LGMNQ99538 433 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 PARD6BQ9BYG5 372 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 ANKZF1Q9H8Y5 726 aa15.62■□□□□ 0.09
TRIM28-209ENST00000597423 KIAA1522Q9P206 1035 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 DMGDHQ9UI17 866 aaKnown RBP15.62■□□□□ 0.09
TRIM28-209ENST00000597423 CHD7Q9P2D1 2997 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 HEPACAM2A8MVW5 462 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SMAPO00193 183 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 MATN3O15232 486 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 ERLIN1O75477 346 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 RENBPP51606 427 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 MRPS25P82663 173 aaKnown RBP15.61■□□□□ 0.09
TRIM28-209ENST00000597423 DLX2Q07687 328 aaPredicted RBP15.61■□□□□ 0.09
TRIM28-209ENST00000597423 NR1H3Q13133 447 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SLC12A1Q13621 1099 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SKIV2LQ15477 1246 aaKnown RBP15.61■□□□□ 0.09
TRIM28-209ENST00000597423 MAP9Q49MG5 647 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 DUPD1Q68J44 220 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 TPGS1Q6ZTW0 290 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 MTSS1LQ765P7 747 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 CIR1Q86X95 450 aaPredicted RBP15.61■□□□□ 0.09
TRIM28-209ENST00000597423 MFN1Q8IWA4 741 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 ARHGAP12Q8IWW6 846 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 ADGRG2Q8IZP9 1017 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 BBS5Q8N3I7 341 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SMRP1Q8NCR6 262 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 P2RY11Q96G91 374 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SNF8Q96H20 258 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SPON2Q9BUD6 331 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 GDF3Q9NR23 364 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 SPHK2Q9NRA0 654 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 WHRNQ9P202 907 aa15.61■□□□□ 0.09
TRIM28-209ENST00000597423 ZNF212Q9UDV6 495 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms