RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 WDR91A4D1P6 747 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A18PA6NE21 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A16PA6NEW6 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A9PA6NNJ1 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A5PA8MXJ8 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TCEA3O75764 348 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 BCAR3O75815 825 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A15PP0C7V4 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 FAM90A14PP0C7W9 464 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 ST6GAL1P15907 406 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 IDUAP35475 653 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 MMP13P45452 471 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TAS2R50P59544 299 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 RPL15P61313 204 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 HSF1Q00613 529 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TLE3Q04726 772 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF91Q05481 1191 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 STIM1Q13586 685 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 DAZAP2Q15038 168 aaPredicted RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TUBB8Q3ZCM7 444 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 SLC9C1Q4G0N8 1177 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 LIN54Q6MZP7 749 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 CASC1Q6TDU7 716 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 RBM44Q6ZP01 1051 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 ADPRHL1Q8NDY3 354 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 SCAMP5Q8TAC9 235 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 CPT1BQ92523 772 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TRMT61AQ96FX7 289 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 SORBS1Q9BX66 1292 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TMEM120AQ9BXJ8 343 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 VPS16Q9H269 839 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 PABPC3Q9H361 631 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 MLXIPQ9HAP2 919 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF69Q9UC07 566 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 IPO11Q9UI26 975 aaKnown RBP5.47□□□□□ -1.53
SMAD4-216ENST00000593223 DAPP1Q9UN19 280 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF804BA4D1E1 1349 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 RPGRIP1LQ68CZ1 1315 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 TNRQ92752 1358 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 C3orf70A6NLC5 250 aaPredicted RBP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 SLC38A8A6NNN8 435 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 TP73O15350 636 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 NBNO60934 754 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 CDK4P11802 303 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 AKR1A1P14550 325 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 SFPQP23246 707 aaKnown RBP eCLIP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 CPA2P48052 419 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 ZNF84P51523 738 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 SLC37A1P57057 533 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 TMEM95Q3KNT9 176 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 TRIM60Q495X7 471 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 MORN5Q5VZ52 161 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 ZKSCAN2Q63HK3 967 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 SLC39A5Q6ZMH5 540 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 RRAGAQ7L523 313 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 TEX19Q8NA77 164 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 VOPP1Q96AW1 172 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 TRAPPC9Q96Q05 1148 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 SCNM1Q9BWG6 230 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 RSPH9Q9H1X1 276 aaPredicted RBP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 AGO4Q9HCK5 861 aaKnown RBP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 PRDM8Q9NQV8 689 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 C19orf53Q9UNZ5 99 aaPredicted RBP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 LZTS1Q9Y250 596 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 ZC3H13Q5T200 1668 aaKnown RBP5.46□□□□□ -1.54
SMAD4-216ENST00000593223 ADGBQ8N7X0 1667 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 DIP2AQ14689 1571 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 EMSYQ7Z589 1322 aa5.46□□□□□ -1.54
SMAD4-216ENST00000593223 GOLGA3Q08378 1498 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 MLH3Q9UHC1 1453 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 BICDL2A1A5D9 508 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 DNAJC9-AS1A6NH13 148 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TCERG1O14776 1098 aaKnown RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 KAT7O95251 611 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 RPS6KB1P23443 525 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 CASP2P42575 452 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 SLC12A2P55011 1212 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 FAM3BP58499 235 aaPredicted RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 RPS13P62277 151 aaKnown RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 ID2Q02363 134 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 DMWDQ09019 674 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 FOXO1Q12778 655 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 PRKG1Q13976 671 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 KCTD2Q14681 263 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TRIP6Q15654 476 aaKnown RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TBRG1Q3YBR2 411 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 ANO1Q5XXA6 986 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TMEM88Q6PEY1 159 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 RFX6Q8HWS3 928 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 RHPN2Q8IUC4 686 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 STT3BQ8TCJ2 826 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 OTUD7AQ8TE49 926 aaPredicted RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 DENND1AQ8TEH3 1009 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 SNRNP27Q8WVK2 155 aaKnown RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TRIM63Q969Q1 353 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 TAF1DQ9H5J8 278 aaPredicted RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 SFXN1Q9H9B4 322 aa5.45□□□□□ -1.54
SMAD4-216ENST00000593223 SEPSECSQ9HD40 501 aaKnown RBP5.45□□□□□ -1.54
SMAD4-216ENST00000593223 NDUFAF4Q9P032 175 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms