RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 TLE6Q9H808 572 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 RNPEPL1Q9HAU8 725 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 ARHGEF4Q9NR80 690 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 THAP1Q9NVV9 213 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 ZFATQ9P243 1243 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 L3MBTL1Q9Y468 752 aa7.6□□□□□ -1.19
ZNF540-206ENST00000589117 CXorf49A8MYA2 514 aaPredicted RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 KPNA6O60684 536 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 TNFRSF21O75509 655 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 T-ENOLP0DO92 83 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 FGFR1P11362 822 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 TFE3P19532 575 aaPredicted RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 GRK2P25098 689 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 SERPINB3P29508 390 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 ELF1P32519 619 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 SERPINB6P35237 376 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 HCAR3P49019 387 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 CCNG1P51959 295 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 NME3Q13232 169 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PAFAH1B3Q15102 231 aaKnown RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 CHI3L2Q15782 390 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PLEKHG4Q58EX7 1191 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 FAM91A1Q658Y4 838 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 STEAP4Q687X5 459 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 NXPE4Q6UWF7 544 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 MARK2Q7KZI7 788 aaKnown RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PID1Q7Z2X4 250 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 STKLD1Q8NE28 680 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 N4BP2L2Q92802 583 aaPredicted RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PTPRN2Q92932 1015 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PGBD4Q96DM1 585 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 RILPQ96NA2 401 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 NUDCD1Q96RS6 583 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 NPY6RQ99463 290 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 VAT1Q99536 393 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 STN1Q9H668 368 aaKnown RBP7.59□□□□□ -1.19
ZNF540-206ENST00000589117 CNGB3Q9NQW8 809 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 BFARQ9NZS9 450 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 SEPT10Q9P0V9 454 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 SIRPGQ9P1W8 387 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 TRHDEQ9UKU6 1024 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 IPPQ9Y573 584 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 MGAMO43451 1857 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 PLXNA1Q9UIW2 1896 aa7.59□□□□□ -1.19
ZNF540-206ENST00000589117 WDR27A2RRH5 827 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CPNE3O75131 537 aaKnown RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 BPGMP07738 259 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 MYL3P08590 195 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 USP17L7P0C7H9 530 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 PAX3P23760 479 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 PCSK1P29120 753 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 TKTL1P51854 596 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 SESN2P58004 480 aaPredicted RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CLN3Q13286 438 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 SPANXN3Q5MJ09 141 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 GRTP1Q5TC63 336 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ITPRIPL1Q6GPH6 555 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 RFX8Q6ZV50 586 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ANKLE1Q8NAG6 615 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 FAM13CQ8NE31 585 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 NPLOC4Q8TAT6 608 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 STMN2Q93045 179 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 NTAN1Q96AB6 310 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 SKA1Q96BD8 255 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 HSH2DQ96JZ2 352 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 LGMNQ99538 433 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 C12orf65Q9H3J6 166 aaKnown RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 LRRC40Q9H9A6 602 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 NEUROD4Q9HD90 331 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 PCMTD2Q9NV79 361 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 KLHL8Q9P2G9 620 aaPredicted RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 IGSF9Q9P2J2 1179 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 STOML1Q9UBI4 398 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 SYNJ2BP-COX16A0A087WUM0 186 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ARHGEF37A1IGU5 675 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 HAS3O00219 553 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 GABRDO14764 452 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 PSMD3O43242 534 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 DIAPH2O60879 1101 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 C1QAP02745 245 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 THP07101 528 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 RPSAP08865 295 aaKnown RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CSH1P0DML2 217 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CSH2P0DML3 217 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 IBSPP21815 317 aaPredicted RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 EPHB2P29323 1055 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 SPRP35270 261 aaPredicted RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ADRA1BP35368 520 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 HADHAP40939 763 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CDK7P50613 346 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ATXN1P54253 815 aaKnown RBP7.58□□□□□ -1.2
ZNF540-206ENST00000589117 TPI1P60174 286 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 ADAM17P78536 824 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 BST1Q10588 318 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 WASHC5Q12768 1159 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 PRPSAP1Q14558 356 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CCDC6Q16204 474 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CTC1Q2NKJ3 1217 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 CCDC153Q494R4 210 aa7.58□□□□□ -1.2
ZNF540-206ENST00000589117 BSPRYQ5W0U4 402 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms