RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MT-ND3P03897 115 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 CCNB1P14635 433 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 LAG3P18627 525 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 CNTFP26441 200 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 OR1D2P34982 312 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 SERPINB9P50453 376 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 EFTUD2Q15029 972 aaKnown RBP eCLIP14.52□□□□□ -0.083e-7■■■■■ 31.4
LIG3-205ENST00000585941 ANO4Q32M45 955 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 PIK3R6Q5UE93 754 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 GKAP1Q5VSY0 366 aaPredicted RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 TTC39BQ5VTQ0 682 aaPredicted RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 SNX30Q5VWJ9 437 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 LINC00523Q86TU6 105 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 KLHDC8BQ8IXV7 354 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 UMODL1-AS1Q8N2C9 162 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 ANKRD42Q8N9B4 389 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 STKLD1Q8NE28 680 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 GPR152Q8TDT2 470 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 DIS3LQ8TF46 1054 aaKnown RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 MZB1Q8WU39 189 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 CKAP2Q8WWK9 683 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 TTC17Q96AE7 1141 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 MTBPQ96DY7 904 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 MRRFQ96E11 262 aaKnown RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 TMEM169Q96HH4 297 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 CELF6Q96J87 481 aaKnown RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 HERC2P3Q9BVR0 1158 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 CEP41Q9BYV8 373 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 ZYG11BQ9C0D3 744 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 RETREG1Q9H6L5 497 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 LRRC40Q9H9A6 602 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 STK39Q9UEW8 545 aa14.52□□□□□ -0.08
LIG3-205ENST00000585941 AAR2Q9Y312 384 aaKnown RBP14.52□□□□□ -0.08
LIG3-205ENST00000585941 IGLV3-10A0A075B6K4 115 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 MAGEB16A2A368 324 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 CACNG3O60359 315 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 TLR5O60602 858 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 KRT38O76015 456 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 ANXA9O76027 345 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 ALDH1A2O94788 518 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 JCHAINP01591 159 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 C1QAP02745 245 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 KRT4P19013 534 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 DRD4P21917 467 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 GRIA1P42261 906 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 NPY2RP49146 381 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 DSG1Q02413 1049 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 ZBTB17Q13105 803 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 SPARCL1Q14515 664 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 MS4A13Q5J8X5 152 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 ARTNQ5T4W7 220 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 RASIP1Q5U651 963 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 KCTD11Q693B1 232 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 NAPEPLDQ6IQ20 393 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 CASC4Q6P4E1 433 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 KLHDC10Q6PID8 442 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 TAX1BP1Q86VP1 789 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 CTAGE3PQ8IX95 158 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 GPR65Q8IYL9 337 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 SLC39A11Q8N1S5 342 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 PPM1NQ8N819 430 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 ZNF461Q8TAF7 563 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 CDKL2Q92772 493 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 MAGEB18Q96M61 343 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 AGAP3Q96P47 875 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 IL12RB2Q99665 862 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 RABEP2Q9H5N1 569 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 PRDM5Q9NQX1 630 aaPredicted RBP14.52□□□□□ -0.09
LIG3-205ENST00000585941 TMEM248Q9NWD8 314 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 MOCS1Q9NZB8 636 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 BFARQ9NZS9 450 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 SAMD15Q9P1V8 674 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 MAFFQ9ULX9 164 aa14.52□□□□□ -0.09
LIG3-205ENST00000585941 COL4A6Q14031 1691 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 SLC12A8A0AV02 714 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 TM9SF1O15321 606 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 TYROBPO43914 113 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 MAFKO60675 156 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 ABLIM3O94929 683 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 POLBP06746 335 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 SNRPAP09012 282 aaKnown RBP14.51□□□□□ -0.09
LIG3-205ENST00000585941 CSH1P0DML2 217 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 CSH2P0DML3 217 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 ATF6P18850 670 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 NFKB1P19838 968 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 CA4P22748 312 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 CD68P34810 354 aaPredicted RBP14.51□□□□□ -0.09
LIG3-205ENST00000585941 IFNAR2P48551 515 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 MPP2Q14168 576 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 FRG1Q14331 258 aaKnown RBP14.51□□□□□ -0.09
LIG3-205ENST00000585941 SPANXN3Q5MJ09 141 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 ZNF683Q8IZ20 524 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 MPP5Q8N3R9 675 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 ZSCAN18Q8TBC5 510 aaPredicted RBP14.51□□□□□ -0.09
LIG3-205ENST00000585941 MGARPQ8TDB4 240 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 DENND1AQ8TEH3 1009 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 VWCEQ96DN2 955 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 VN1R3Q9BXE9 311 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 SLC39A8Q9C0K1 460 aa14.51□□□□□ -0.09
LIG3-205ENST00000585941 CASS4Q9NQ75 786 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms