RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595		A0A1W2PQM1	296 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FRMD3	A2A2Y4	597 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	MBD3L5	A6NJ08	208 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	BTBD18	B2RXH4	712 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	PPM1D	O15297	605 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	CA12	O43570	354 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	HNRNPCL1	O60812	293 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	TBCA	O75347	108 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FRAT2	O75474	233 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	IPO13	O94829	963 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	ZFPL1	O95159	310 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	EIF2S1	P05198	315 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	CYP3A4	P08684	503 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	TNNT1	P13805	278 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	COX7A2	P14406	83 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	MGAT1	P26572	445 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	BSG	P35613	385 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	HNF1B	P35680	557 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	RPL7A	P62424	266 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	DGCR2	P98153	550 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FPGS	Q05932	587 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SLC20A2	Q08357	652 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	DYRK1A	Q13627	763 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	CLCA4	Q14CN2	919 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FAM102A	Q5T9C2	384 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SFRP4	Q6FHJ7	346 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	GPR149	Q86SP6	731 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	MAFA	Q8NHW3	353 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	IL17D	Q8TAD2	202 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	GABPB2	Q8TAK5	448 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	ATG4A	Q8WYN0	398 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	RSPH1	Q8WYR4	309 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	OVCA2	Q8WZ82	227 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF622	Q969S3	477 aa	Known RBP eCLIP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SNX21	Q969T3	373 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SAAL1	Q96ER3	474 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	TRMT61A	Q96FX7	289 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	GPATCH1	Q9BRR8	931 aa	Known RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	AMBRA1	Q9C0C7	1298 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SERHL2	Q9H4I8	314 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	DECR2	Q9NUI1	292 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	CWC25	Q9NXE8	425 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	HCN3	Q9P1Z3	774 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	C5AR2	Q9P296	337 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF70	Q9UC06	446 aa	Predicted RBP	5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SLCO3A1	Q9UIG8	710 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	PCDHB2	Q9Y5E7	798 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	FAM169A	Q9Y6X4	670 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	SPATA31A3	Q5VYP0	1347 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	DNMBP	Q6XZF7	1577 aa		5.21	□□□□□ -1.58
SS18-223	ENST00000583595	GOLGA6L10	A0A0M3HER8	536 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595		A0A1B0GTW7	788 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	CAPN14	A8MX76	684 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595		E7ENX8	843 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF213	O14771	459 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ZNF185	O15231	689 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	OR2C1	O95371	312 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	HLA-DOA	P06340	250 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	PTMA	P06454	111 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	HSP90AB1	P08238	724 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	SELL	P14151	372 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ARSA	P15289	507 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	FGFR4	P22455	802 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	CXCR5	P32302	372 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ANXA11	P50995	505 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	HMGA2	P52926	109 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MVD	P53602	400 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ARHGAP8	P85298	464 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	NHLH2	Q02577	135 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	TAP2	Q03519	686 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	DEUP1	Q05D60	604 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	KYNU	Q16719	465 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	RUNDC3A	Q59EK9	446 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	RAB41	Q5JT25	222 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	DNTTIP2	Q5QJE6	756 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	PLEKHS1	Q5SXH7	462 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	GARNL3	Q5VVW2	1013 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	NAPEPLD	Q6IQ20	393 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	SHQ1	Q6PI26	577 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	CRELD2	Q6UXH1	353 aa	Predicted RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	OR8H3	Q8N146	312 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	TNIP2	Q8NFZ5	429 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	OR56A1	Q8NGH5	318 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	GPR150	Q8NGU9	434 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	ARHGEF2	Q92974	986 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	FAR2	Q96K12	515 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	KLHL15	Q96M94	604 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	C5orf34	Q96MH7	638 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MPHOSPH9	Q99550	1183 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	HEMGN	Q9BXL5	484 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MAK16	Q9BXY0	300 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MRPL9	Q9BYD2	267 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	REXO4	Q9GZR2	422 aa	Known RBP	5.2	□□□□□ -1.58
SS18-223	ENST00000583595	KAT14	Q9H8E8	782 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	SYNPO2L	Q9H987	977 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	KCNK9	Q9NPC2	374 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	MTMR4	Q9NYA4	1195 aa		5.2	□□□□□ -1.58
SS18-223	ENST00000583595	EHD2	Q9NZN4	543 aa		5.2	□□□□□ -1.58

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