RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FSCBQ5H9T9 825 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 TANGO2Q6ICL3 276 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 TMEM25Q86YD3 366 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 PPM1EQ8WY54 764 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 SLCO2A1Q92959 643 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 HMCESQ96FZ2 354 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 SNX24Q9Y343 169 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 BCLAF3A2AJT9 711 aaKnown RBP25.75■■□□□ 1.71
SHMT1-207ENST00000580002 FCARP24071 287 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 VSNL1P62760 191 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 XRCC4Q13426 336 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 PRKD1Q15139 912 aaPredicted RBP25.75■■□□□ 1.71
SHMT1-207ENST00000580002 RABGAP1LQ5R372 815 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 TRIM68Q6AZZ1 485 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 UMODL1-AS1Q8N2C9 162 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 TFB1MQ8WVM0 346 aaKnown RBP25.75■■□□□ 1.71
SHMT1-207ENST00000580002 RSAD2Q8WXG1 361 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 SMARCD2Q92925 531 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 ASIC4Q96FT7 647 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 CDH7Q9ULB5 785 aa25.75■■□□□ 1.71
SHMT1-207ENST00000580002 FAM187AA6NFU0 413 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 KCNK1O00180 336 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 MYBL2P10244 700 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 GARSP41250 739 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 CDH4P55283 916 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 PDK1Q15118 436 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 ACBD5Q5T8D3 534 aaPredicted RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 DUPD1Q68J44 220 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 GSPT2Q8IYD1 628 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 GPR161Q8N6U8 529 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 CELF5Q8N6W0 485 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 ZFYVE19Q96K21 471 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 DDX50Q9BQ39 737 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 ERP44Q9BS26 406 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 MYOFQ9NZM1 2061 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 RASA4BC9J798 803 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 RASA4O43374 803 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 SERPINB6P35237 376 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 RPL21P46778 160 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 CARSP49589 748 aaKnown RBP25.74■■□□□ 1.71
SHMT1-207ENST00000580002 LEKR1Q6ZMV7 388 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 CARNMT1Q8N4J0 409 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 SMRP1Q8NCR6 262 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 OR7D4Q8NG98 312 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 DDI1Q8WTU0 396 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 PLA2G2FQ9BZM2 168 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 SEPT10Q9P0V9 454 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 ZNF510Q9Y2H8 683 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 DOCK8Q8NF50 2099 aa25.74■■□□□ 1.71
SHMT1-207ENST00000580002 IVDP26440 423 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 RPL22P35268 128 aaKnown RBP25.73■■□□□ 1.71
SHMT1-207ENST00000580002 PTK6Q13882 451 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 CXorf57Q6NSI4 855 aaKnown RBP25.73■■□□□ 1.71
SHMT1-207ENST00000580002 ADGRG2Q8IZP9 1017 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 CPXM2Q8N436 756 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 CCDC110Q8TBZ0 833 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 GRK7Q8WTQ7 553 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 RUNDC3BQ96NL0 473 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 GUCD1Q96NT3 240 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 GDF3Q9NR23 364 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 GDE1Q9NZC3 331 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 ACTL7AQ9Y615 435 aa25.73■■□□□ 1.71
SHMT1-207ENST00000580002 HEPACAM2A8MVW5 462 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 J3KR12 359 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 MAFKO60675 156 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 HOXD9P28356 352 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 GBP2P32456 591 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 CDKL3Q8IVW4 592 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 LZTR1Q8N653 840 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 HTR3CQ8WXA8 447 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 IFT81Q8WYA0 676 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 ZNF419Q96HQ0 510 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 NEUROG2Q9H2A3 272 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 ZMYM5Q9UJ78 669 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 USP15Q9Y4E8 981 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 NYNRINQ9P2P1 1898 aaKnown RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 A0A1B0GVM2 712 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 TCAF2A6NFQ2 919 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 F5H423 210 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 CLDN11O75508 207 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 TCF3P15923 654 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 WEE1P30291 646 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 CHKAP35790 457 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 PPIDQ08752 370 aaKnown RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 WASHC5Q12768 1159 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 FYB2Q5VWT5 728 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 BZW1Q7L1Q6 419 aaKnown RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 HJURPQ8NCD3 748 aaPredicted RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 HDAC11Q96DB2 347 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 RPP25Q9BUL9 199 aaKnown RBP25.72■■□□□ 1.71
SHMT1-207ENST00000580002 ASIC3Q9UHC3 531 aa25.72■■□□□ 1.71
SHMT1-207ENST00000580002 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 TARSL2A2RTX5 802 aaKnown RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 GRXCR2A6NFK2 248 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 HACD1B0YJ81 288 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 PPP1R12AO14974 1030 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-207ENST00000580002 RAMP2O60895 175 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 GAS8O95995 478 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 GLDCP23378 1020 aa25.71■■□□□ 1.71
SHMT1-207ENST00000580002 MZF1P28698 734 aaPredicted RBP25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms