RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 RNF219Q5W0B1 726 aaPredicted RBP15.28■□□□□ 0.04
SS18-212ENST00000579061 DGLUCYQ7Z3D6 616 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 LUZP1Q86V48 1076 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 SLC41A1Q8IVJ1 513 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 EMC1Q8N766 993 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 ZNF366Q8N895 744 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 JOSD2Q8TAC2 188 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 CEP76Q8TAP6 659 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 CENPIQ92674 756 aaPredicted RBP15.28■□□□□ 0.04
SS18-212ENST00000579061 ALG14Q96F25 216 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 TOE1Q96GM8 510 aaKnown RBP15.28■□□□□ 0.04
SS18-212ENST00000579061 VCPIP1Q96JH7 1222 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 NUP58Q9BVL2 599 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 SELENOOQ9BVL4 669 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 TTYH3Q9C0H2 523 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 PCED1AQ9H1Q7 454 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 SEPT11Q9NVA2 429 aaKnown RBP15.28■□□□□ 0.04
SS18-212ENST00000579061 AIPL1Q9NZN9 384 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 SCML1Q9UN30 329 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 CACNA1EQ15878 2313 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 NUMA1Q14980 2115 aa15.28■□□□□ 0.04
SS18-212ENST00000579061 EDDM13A0A1B0GTR0 161 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 TCRBV5S1A1TA0A578 114 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 LRRC53A6NM62 1247 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 TNFAIP3P21580 790 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 ITPKAP23677 461 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 GGCXP38435 758 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 PRKCIP41743 596 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 CTSOP43234 321 aaPredicted RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 IRAK1P51617 712 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 RPS14P62263 151 aaKnown RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 ATP11AP98196 1134 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 FANCCQ00597 558 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 NRG1Q02297 640 aaPredicted RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 DUOXA1Q1HG43 343 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 ZSCAN23Q3MJ62 389 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 ARL13BQ3SXY8 428 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 SYCP2LQ5T4T6 812 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 ZNF776Q68DI1 518 aaPredicted RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 ACAD10Q6JQN1 1059 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 SLC23A3Q6PIS1 610 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 ARMCX6Q7L4S7 300 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 SETD3Q86TU7 594 aaPredicted RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 FAM131BQ86XD5 332 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 HSPA12BQ96MM6 686 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 FEM1AQ9BSK4 669 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 NUSAP1Q9BXS6 441 aaKnown RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 RSPH9Q9H1X1 276 aaPredicted RBP15.27■□□□□ 0.04
SS18-212ENST00000579061 RETREG1Q9H6L5 497 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 RXFP3Q9NSD7 469 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 TMEM74BQ9NUR3 256 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 OR51B4Q9Y5P0 310 aa15.27■□□□□ 0.04
SS18-212ENST00000579061 CNOT1A5YKK6 2376 aaKnown RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 CHD5Q8TDI0 1954 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 LNP1A1A4G5 178 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 E9PAM4 449 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 GOLGA6L19H0YKK7 550 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 RNASEH1O60930 286 aaKnown RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 SIN3BO75182 1162 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 CNTN5O94779 1100 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 DNTTP04053 509 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 RFC1P35251 1148 aaPredicted RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 ADRA1BP35368 520 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 SFSWAPQ12872 951 aaKnown RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 ASIC2Q16515 512 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 C15orf59Q2T9L4 293 aaPredicted RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 TTC31Q49AM3 519 aaPredicted RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 TRIM61Q5EBN2 209 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 WDR45BQ5MNZ6 344 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 ARTNQ5T4W7 220 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 C9orf64Q5T6V5 341 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 STPG1Q5TH74 334 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 SFMBT2Q5VUG0 894 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 TCEAL6Q6IPX3 200 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 WDR59Q6PJI9 974 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 MCOLN2Q8IZK6 566 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 DNASE2BQ8WZ79 361 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 TCEAL3Q969E4 200 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 IQCDQ96DY2 449 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 EDEM2Q9BV94 578 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 GPR174Q9BXC1 333 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 OSBPL2Q9H1P3 480 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 PPARGC1AQ9UBK2 798 aaKnown RBP15.26■□□□□ 0.03
SS18-212ENST00000579061 SUSD2Q9UGT4 822 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 SLCO3A1Q9UIG8 710 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 SLC25A13Q9UJS0 675 aa15.26■□□□□ 0.03
SS18-212ENST00000579061 ANKRD62A6NC57 917 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 TTC34A8MYJ7 566 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 PATE3B3GLJ2 98 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 ATP9BO43861 1147 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 GZMAP12544 262 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 GPD1P21695 349 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 PBX1P40424 430 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 UBASH3AP57075 661 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 KRT83P78385 493 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 IRX4P78413 519 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 CDO1Q16878 200 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 ALFQ53S48 1182 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 IL31Q6EBC2 164 aa15.25■□□□□ 0.03
SS18-212ENST00000579061 DNAJC24Q6P3W2 148 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms