RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SERPINB8P50452 374 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 MSLNQ13421 630 aaPredicted RBP14.8□□□□□ -0.04
VPS35-210ENST00000568784 FSTL4Q6MZW2 842 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 LRRC8EQ6NSJ5 796 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 MAVSQ7Z434 540 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 DSELQ8IZU8 1212 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 CHST13Q8NET6 341 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 DNERQ8NFT8 737 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 KCTD4Q8WVF5 259 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 CDH19Q9H159 772 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 VPS33BQ9H267 617 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 GBA2Q9HCG7 927 aaPredicted RBP14.8□□□□□ -0.04
VPS35-210ENST00000568784 PPME1Q9Y570 386 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 COMMD3-BMI1R4GMX3 469 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 CLDN5O00501 218 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 ARL1P40616 181 aaPredicted RBP14.8□□□□□ -0.04
VPS35-210ENST00000568784 TLR1Q15399 786 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 C16orf89Q6UX73 402 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 RNF111Q6ZNA4 994 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 ZNF534Q76KX8 674 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 URGCPQ8TCY9 931 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 WDR41Q9HAD4 459 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 CHRAC1Q9NRG0 131 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 BCAP29Q9UHQ4 241 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 SORCS3Q9UPU3 1222 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 AURKCQ9UQB9 309 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 GNEQ9Y223 722 aaKnown RBP14.8□□□□□ -0.04
VPS35-210ENST00000568784 CDYLQ9Y232 598 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 BUD23O43709 281 aaKnown RBP14.8□□□□□ -0.04
VPS35-210ENST00000568784 JCHAINP01591 159 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 TSPAN8P19075 237 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 GRIA4P48058 902 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 PRPSAP1Q14558 356 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 OLFML1Q6UWY5 402 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 NAPRTQ6XQN6 538 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 ILDR2Q71H61 639 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 TMC7Q7Z402 723 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 REPS2Q8NFH8 660 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 ACTRT2Q8TDY3 377 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 RNF139Q8WU17 664 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 GPR20Q99678 358 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 SLC4A5Q9BY07 1137 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 SPATC1LQ9H0A9 340 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 GOLGA2P5Q9HBQ8 144 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 CHST12Q9NRB3 414 aa14.8□□□□□ -0.04
VPS35-210ENST00000568784 TMEM233B4DJY2 109 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 FAM189A1O60320 539 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 HBP1O60381 514 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 ZBTB7AO95365 584 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 ARRB2P32121 409 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 GNL1P36915 607 aaPredicted RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 GRIA2P42262 883 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 TPI1P60174 286 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 MBTD1Q05BQ5 628 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 PTK2BQ14289 1009 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 POU6F1Q14863 301 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 FBXL19Q6PCT2 694 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 KCNMB4Q86W47 210 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 ZFAND2BQ8WV99 257 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 ACE2Q9BYF1 805 aaPredicted RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 LRRC40Q9H9A6 602 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 GALNT8Q9NY28 637 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 TUBGCP4Q9UGJ1 667 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 HNRNPLP14866 589 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS35-210ENST00000568784 RALGDSQ12967 914 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 LSM12Q3MHD2 195 aaKnown RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 ARL13AQ5H913 290 aaPredicted RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 IPMKQ8NFU5 416 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 LIN28AQ9H9Z2 209 aaKnown RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 PREBQ9HCU5 417 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 CITO14578 2027 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 KLHL33A6NCF5 533 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 GCATO75600 419 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 FAM200BP0CF97 657 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 PDAP1Q13442 181 aaKnown RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 NADK2Q4G0N4 442 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 SLC9A4Q6AI14 798 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 CTU1Q7Z7A3 348 aaKnown RBP14.79□□□□□ -0.04
VPS35-210ENST00000568784 ZNF567Q8N184 647 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 FAM81AQ8TBF8 368 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 SORT1Q99523 831 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 ELP3Q9H9T3 547 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 CCDC167Q9P0B6 97 aa14.79□□□□□ -0.04
VPS35-210ENST00000568784 TPSB2P20231 275 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 LMO2P25791 158 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 SCNN1BP51168 640 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 OAZ1P54368 228 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 CTBP1Q13363 440 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 TPSAB1Q15661 275 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 TAZQ16635 292 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 NCBP2-AS2Q69YL0 99 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 CYP4V2Q6ZWL3 525 aaPredicted RBP14.78□□□□□ -0.04
VPS35-210ENST00000568784 CXCL16Q9H2A7 254 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 FZD8Q9H461 694 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PIM2Q9P1W9 311 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PCDHGB4Q9UN71 923 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PSMD13Q9UNM6 376 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 PCDHGB5Q9Y5G0 923 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 DFFAO00273 331 aa14.78□□□□□ -0.04
VPS35-210ENST00000568784 CCNT2O60583 730 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms