RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SDHAF4Q5VUM1 108 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 RASSF3Q86WH2 238 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 SCN4BQ8IWT1 228 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 SUGP1Q8IWZ8 645 aaKnown RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 TRIM55Q9BYV6 548 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TBC1D13Q9NVG8 400 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 ABI2Q9NYB9 513 aaPredicted RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 A0A0G2JND7 137 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 ZCWPW2A0A1B0GU75 182 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 A0A1W2PQH9 124 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 ARHGAP42A6NI28 874 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TMEM189-UBE2V1I3L0A0 370 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TPP1O14773 563 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 OAZ2O95190 189 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 T-ENOLP0DO92 83 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TARSP26639 723 aaKnown RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 HOXC13P31276 330 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 OR1G1P47890 313 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 ITPRIPL1Q6GPH6 555 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TMEM135Q86UB9 458 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 MTDHQ86UE4 582 aaKnown RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 DNAAF3Q8N9W5 541 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 CD99L2Q8TCZ2 262 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 ZNF419Q96HQ0 510 aaPredicted RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 APOL2Q9BQE5 337 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 LRRC40Q9H9A6 602 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 TMEM51Q9NW97 253 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 UBP1Q9NZI7 540 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 BFARQ9NZS9 450 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 PRG3Q9Y2Y8 225 aaPredicted RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 MRPL42Q9Y6G3 142 aaKnown RBP20.74■□□□□ 0.91
CLN3-230ENST00000568076 SHROOM3Q8TF72 1996 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 MOXD2PA6NHM9 499 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 ERI2A8K979 691 aaKnown RBP20.73■□□□□ 0.91
CLN3-230ENST00000568076 GSRP00390 522 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 ITGA2BP08514 1039 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 KRT16P08779 473 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 DLDP09622 509 aaKnown RBP20.73■□□□□ 0.91
CLN3-230ENST00000568076 CCR1P32246 355 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 GPR15P49685 360 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 BST1Q10588 318 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 PDE1CQ14123 709 aaPredicted RBP20.73■□□□□ 0.91
CLN3-230ENST00000568076 TAF1BQ53T94 588 aaPredicted RBP20.73■□□□□ 0.91
CLN3-230ENST00000568076 OTOP3Q7RTS5 596 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 FCRL2Q96LA5 508 aaPredicted RBP20.73■□□□□ 0.91
CLN3-230ENST00000568076 TXLNGQ9NUQ3 528 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 NDFIP2Q9NV92 336 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 ZFATQ9P243 1243 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 TTC3P53804 2025 aa20.73■□□□□ 0.91
CLN3-230ENST00000568076 CCDC195A0A1B0GUA6 201 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 DFFAO00273 331 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 BPGMP07738 259 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 NOGQ13253 232 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 CHI3L2Q15782 390 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 ACMSDQ8TDX5 336 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 USP33Q8TEY7 942 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 E2F7Q96AV8 911 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 ZNF669Q96BR6 464 aaPredicted RBP20.72■□□□□ 0.91
CLN3-230ENST00000568076 TSGA13Q96PP4 275 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 EMCNQ9ULC0 261 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 MAGED2Q9UNF1 606 aaPredicted RBP20.72■□□□□ 0.91
CLN3-230ENST00000568076 A0A1W2PQ45 241 aaPredicted RBP20.72■□□□□ 0.91
CLN3-230ENST00000568076 A0A1W2PQY0 241 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 SNCBQ16143 134 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 DDR2Q16832 855 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 CTC1Q2NKJ3 1217 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 ANKRD20A4Q4UJ75 823 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 LHX8Q68G74 356 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 NUDCD3Q8IVD9 361 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 SLC43A3Q8NBI5 491 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 URGCPQ8TCY9 931 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 MFSD3Q96ES6 412 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 TMEM120AQ9BXJ8 343 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 ZNF395Q9H8N7 513 aaPredicted RBP20.72■□□□□ 0.91
CLN3-230ENST00000568076 ZFP69BQ9UJL9 534 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 HAO1Q9UJM8 370 aa20.72■□□□□ 0.91
CLN3-230ENST00000568076 ATP9BO43861 1147 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 CACNG3O60359 315 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 USP1O94782 785 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 CBX6O95503 412 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 F7P08709 466 aaPredicted RBP20.71■□□□□ 0.91
CLN3-230ENST00000568076 ARFIP2P53365 341 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 TMPRSS15P98073 1019 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 ZNF33AQ06730 810 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 C16orf46Q6P387 395 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 ZNF449Q6P9G9 518 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 CLNKQ7Z7G1 428 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 KLHDC8BQ8IXV7 354 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-230ENST00000568076 TBC1D31Q96DN5 1066 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 TMEM237Q96Q45 408 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 SLC39A8Q9C0K1 460 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 C20orf27Q9GZN8 174 aa20.71■□□□□ 0.91
CLN3-230ENST00000568076 C2orf71A6NGG8 1288 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 KCNU1A8MYU2 1149 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 ATP6V1G2O95670 118 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 TPH1P17752 444 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 CCNCP24863 283 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 GRK4P32298 578 aa20.7■□□□□ 0.9
CLN3-230ENST00000568076 GP5P40197 560 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms