RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SYT13Q7L8C5 426 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 LRRC8AQ8IWT6 810 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 ZNF366Q8N895 744 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 OR7D4Q8NG98 312 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 MYO19Q96H55 970 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 MRGPRX3Q96LB0 322 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 HHIPQ96QV1 700 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 PSMB7Q99436 277 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 FEM1AQ9BSK4 669 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 IER2Q9BTL4 223 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 MTG2Q9H4K7 406 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 CD248Q9HCU0 757 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 TRIM10Q9UDY6 481 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 DNAI1Q9UI46 699 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 RAD54BQ9Y620 910 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 STON1Q9Y6Q2 735 aa20.09■□□□□ 0.81
CLN3-225ENST00000566824 A0A1W2PQF6 199 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 RHOCP08134 193 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 HLA-EP13747 358 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 GOT1P17174 413 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 POLR2EP19388 210 aaKnown RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 PRKCHP24723 683 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 EPHB2P29323 1055 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 OR1E1P30953 314 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 NTSR1P30989 418 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 GJC1P36383 396 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 STK19P49842 368 aaPredicted RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 CCR3P51677 355 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 PLK1P53350 603 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 CCZ1BP86790 482 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 CCZ1P86791 482 aaPredicted RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 EIF4HQ15056 248 aaKnown RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 PPP6R3Q5H9R7 873 aaPredicted RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 CCDC117Q8IWD4 279 aaPredicted RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 CHPFQ8IZ52 775 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 NETO2Q8NC67 525 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 NOL6Q9H6R4 1146 aaKnown RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.08■□□□□ 0.81
CLN3-225ENST00000566824 KLHL11Q9NVR0 708 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 TMEM248Q9NWD8 314 aa20.08■□□□□ 0.81
CLN3-225ENST00000566824 CWC15Q9P013 229 aaKnown RBP20.08■□□□□ 0.81
CLN3-225ENST00000566824 BUB1BO60566 1050 aaPredicted RBP20.07■□□□□ 0.8
CLN3-225ENST00000566824 SNAP91O60641 907 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 ATG13O75143 517 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 CD48P09326 243 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 SP9P0CG40 484 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 GLDCP23378 1020 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 MAN1A1P33908 653 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 ACVRL1P37023 503 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 NOP2P46087 812 aaKnown RBP20.07■□□□□ 0.8
CLN3-225ENST00000566824 VAV2P52735 878 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 NUBP1P53384 320 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 ENPP2Q13822 863 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 GSE1Q14687 1217 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 CRY1Q16526 586 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 ZNF557Q8N988 423 aaPredicted RBP20.07■□□□□ 0.8
CLN3-225ENST00000566824 KCNV2Q8TDN2 545 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 ACDQ96AP0 544 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 RPL10LQ96L21 214 aaKnown RBP20.07■□□□□ 0.8
CLN3-225ENST00000566824 EPAS1Q99814 870 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 GABRG3Q99928 467 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 SLCO3A1Q9UIG8 710 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 MFHAS1Q9Y4C4 1052 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 FANCMQ8IYD8 2048 aa20.07■□□□□ 0.8
CLN3-225ENST00000566824 NYNRINQ9P2P1 1898 aaKnown RBP20.07■□□□□ 0.8
CLN3-225ENST00000566824 EEF2KO00418 725 aaKnown RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 PJA2O43164 708 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 TIMM44O43615 452 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 BUB1O43683 1085 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 PAPSS2O95340 614 aaPredicted RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 DLDP09622 509 aaKnown RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 ARHGAP25P42331 645 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 ARSEP51690 589 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 HADHBP55084 474 aaKnown RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 TPI1P60174 286 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 DPYSL2Q16555 572 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 BOLA3Q53S33 107 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 HEATR6Q6AI08 1181 aaKnown RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 SETD3Q86TU7 594 aaPredicted RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 PSTKQ8IV42 348 aaKnown RBP20.06■□□□□ 0.8
CLN3-225ENST00000566824 UCMAQ8WVF2 138 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 TEKT4Q8WW24 435 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 NCAPGQ9BPX3 1015 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 MUC3BQ9H195 1237 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 TMEM245Q9H330 911 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 PCDH18Q9HCL0 1135 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 VPS28Q9UK41 221 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 SLC8A2Q9UPR5 921 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 ERVW-1Q9UQF0 538 aa20.06■□□□□ 0.8
CLN3-225ENST00000566824 A0A0A6YYK5 440 aaPredicted RBP20.05■□□□□ 0.8
CLN3-225ENST00000566824 ILVBLA1L0T0 632 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 HOXB2P14652 356 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 COMTP21964 271 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 IL4RP24394 825 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 FNTBP49356 437 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 GNA12Q03113 381 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 MMRN1Q13201 1228 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 SLC12A1Q13621 1099 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 DPYSQ14117 519 aa20.05■□□□□ 0.8
CLN3-225ENST00000566824 FNDC3BQ53EP0 1204 aaKnown RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms